miRNA display CGI


Results 21 - 40 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21405 5' -65.9 NC_004812.1 + 27679 0.66 0.482974
Target:  5'- gGCGcCGCGUGccGCCgGGGCCcagccacACGCcGGc -3'
miRNA:   3'- -UGC-GCGCAC--CGGgCCCGG-------UGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 153187 0.66 0.482974
Target:  5'- gGCGcCGCGUGccGCCgGGGCCcagccacACGCcGGc -3'
miRNA:   3'- -UGC-GCGCAC--CGGgCCCGG-------UGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 130705 0.66 0.482084
Target:  5'- gACGCGCGcccgcggcgcugGGCgCGGgcGCCGCGgaGGg -3'
miRNA:   3'- -UGCGCGCa-----------CCGgGCC--CGGUGCgaCCa -5'
21405 5' -65.9 NC_004812.1 + 49556 0.66 0.478529
Target:  5'- gACGCGC-UGGCCauccaguacgagcaGGGCCuggggcUGCUGGc -3'
miRNA:   3'- -UGCGCGcACCGGg-------------CCCGGu-----GCGACCa -5'
21405 5' -65.9 NC_004812.1 + 44353 0.66 0.478529
Target:  5'- gGCGCGCGggcaaagggcGuGCCCGGggcgcagcccgcggcGCCGCGCaGGg -3'
miRNA:   3'- -UGCGCGCa---------C-CGGGCC---------------CGGUGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 43681 0.66 0.474988
Target:  5'- -gGCGCu--GCgCGGGCCGCGCUGc- -3'
miRNA:   3'- ugCGCGcacCGgGCCCGGUGCGACca -5'
21405 5' -65.9 NC_004812.1 + 108575 0.66 0.474988
Target:  5'- gGCGCGCGccccGCUCGGGCaGCGC-GGc -3'
miRNA:   3'- -UGCGCGCac--CGGGCCCGgUGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 20123 0.66 0.474988
Target:  5'- gGCGCGCGggGGagcggaCCGGGCCcCgGCcGGg -3'
miRNA:   3'- -UGCGCGCa-CCg-----GGCCCGGuG-CGaCCa -5'
21405 5' -65.9 NC_004812.1 + 15963 0.66 0.474988
Target:  5'- -gGCGCGUGGCgCC--GCCGCGCggcGGc -3'
miRNA:   3'- ugCGCGCACCG-GGccCGGUGCGa--CCa -5'
21405 5' -65.9 NC_004812.1 + 59942 0.66 0.474988
Target:  5'- -aGCGCGguggucaccugcUGGCCCacgGGGUCGCGC-GGc -3'
miRNA:   3'- ugCGCGC------------ACCGGG---CCCGGUGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 33022 0.66 0.474988
Target:  5'- gGCGCGCGUGuGCUCGG-CCGcCGCccccGGc -3'
miRNA:   3'- -UGCGCGCAC-CGGGCCcGGU-GCGa---CCa -5'
21405 5' -65.9 NC_004812.1 + 82211 0.66 0.474988
Target:  5'- aGCGgGC-UGGCCCGGcCCGCGCcGa- -3'
miRNA:   3'- -UGCgCGcACCGGGCCcGGUGCGaCca -5'
21405 5' -65.9 NC_004812.1 + 82060 0.66 0.474988
Target:  5'- aAUGCGCGUGGCUgcGGCCA-GgaGGa -3'
miRNA:   3'- -UGCGCGCACCGGgcCCGGUgCgaCCa -5'
21405 5' -65.9 NC_004812.1 + 15183 0.66 0.474988
Target:  5'- -gGCGCGccGCCCuccGGGCCucgcUGCUGGa -3'
miRNA:   3'- ugCGCGCacCGGG---CCCGGu---GCGACCa -5'
21405 5' -65.9 NC_004812.1 + 91799 0.66 0.474105
Target:  5'- aGCGCaGCGUcauGGCCUccggucguaggugGGGUagcgGCGCUGGUa -3'
miRNA:   3'- -UGCG-CGCA---CCGGG-------------CCCGg---UGCGACCA- -5'
21405 5' -65.9 NC_004812.1 + 94523 0.66 0.466193
Target:  5'- uGCGCGCGUcaGGCgCGGGUCggACgGCgGGg -3'
miRNA:   3'- -UGCGCGCA--CCGgGCCCGG--UG-CGaCCa -5'
21405 5' -65.9 NC_004812.1 + 74401 0.66 0.466193
Target:  5'- -gGCGCG-GG-CCGGGCCAgccCGCUccGGg -3'
miRNA:   3'- ugCGCGCaCCgGGCCCGGU---GCGA--CCa -5'
21405 5' -65.9 NC_004812.1 + 135586 0.66 0.466193
Target:  5'- cAUGCGCGgccucaacGGCCCggugGGGCgCACGCgcuucgugcaccUGGUg -3'
miRNA:   3'- -UGCGCGCa-------CCGGG----CCCG-GUGCG------------ACCA- -5'
21405 5' -65.9 NC_004812.1 + 103185 0.66 0.466193
Target:  5'- -aGCGCGgccccgGGCUCcucgguGGCCGCGCUGcGg -3'
miRNA:   3'- ugCGCGCa-----CCGGGc-----CCGGUGCGAC-Ca -5'
21405 5' -65.9 NC_004812.1 + 81086 0.66 0.466193
Target:  5'- cACGCGCcuggGGCCCguggcggugcGGGCgGCGUggUGGg -3'
miRNA:   3'- -UGCGCGca--CCGGG----------CCCGgUGCG--ACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.