miRNA display CGI


Results 21 - 40 of 610 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21406 3' -62.4 NC_004812.1 + 84822 0.66 0.686459
Target:  5'- aCGACGGCUCgGCgACCCCcgcccccccgccuGUCGcAGCGa -3'
miRNA:   3'- cGCUGCCGGG-CG-UGGGG-------------CAGC-UCGUc -5'
21406 3' -62.4 NC_004812.1 + 106150 0.66 0.686459
Target:  5'- cGgGAgCGGCUCgGCGuCCggcugggCCGUCGGGCGGg -3'
miRNA:   3'- -CgCU-GCCGGG-CGU-GG-------GGCAGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 121001 0.66 0.67878
Target:  5'- cGCGuuCGGCCCgGCGCacgccucggcggucgCCGUCGGGUg- -3'
miRNA:   3'- -CGCu-GCCGGG-CGUGg--------------GGCAGCUCGuc -5'
21406 3' -62.4 NC_004812.1 + 2928 0.66 0.677819
Target:  5'- gGCGAaGGCCaGguCCCgCGUggaGAGCAGg -3'
miRNA:   3'- -CGCUgCCGGgCguGGG-GCAg--CUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 144632 0.66 0.677819
Target:  5'- cCGGCGGaacCCCGC-CCCCG-CGGGaCGa -3'
miRNA:   3'- cGCUGCC---GGGCGuGGGGCaGCUC-GUc -5'
21406 3' -62.4 NC_004812.1 + 134111 0.66 0.677819
Target:  5'- cGUGACGGUgguCCGCGCgCCGaUgGGGuCGGg -3'
miRNA:   3'- -CGCUGCCG---GGCGUGgGGC-AgCUC-GUC- -5'
21406 3' -62.4 NC_004812.1 + 19141 0.66 0.677819
Target:  5'- -gGGCGGCCaGCGCCgCGggGGGCGc -3'
miRNA:   3'- cgCUGCCGGgCGUGGgGCagCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 27206 0.66 0.677819
Target:  5'- cGCGccgcCGcGCCCGCGCCuCUGgcugcgCGAGCu- -3'
miRNA:   3'- -CGCu---GC-CGGGCGUGG-GGCa-----GCUCGuc -5'
21406 3' -62.4 NC_004812.1 + 138693 0.66 0.677819
Target:  5'- cCGACcgGGCCuCGCGCCCgGaCGAccGCGGc -3'
miRNA:   3'- cGCUG--CCGG-GCGUGGGgCaGCU--CGUC- -5'
21406 3' -62.4 NC_004812.1 + 146553 0.66 0.677819
Target:  5'- aUGACGaCgCGUACCUCGUCGGggguGCAGa -3'
miRNA:   3'- cGCUGCcGgGCGUGGGGCAGCU----CGUC- -5'
21406 3' -62.4 NC_004812.1 + 145830 0.66 0.677819
Target:  5'- uCGGCGGCCCaCGCCCggggacUGUCuuGCGGc -3'
miRNA:   3'- cGCUGCCGGGcGUGGG------GCAGcuCGUC- -5'
21406 3' -62.4 NC_004812.1 + 145385 0.66 0.677819
Target:  5'- cGUGugGGCCUGCgucACCugCCGgcgCGcGCGGg -3'
miRNA:   3'- -CGCugCCGGGCG---UGG--GGCa--GCuCGUC- -5'
21406 3' -62.4 NC_004812.1 + 41959 0.66 0.677819
Target:  5'- gGUGGCGGgCCGCACCgaCGUccucaucaCGGGcCAGc -3'
miRNA:   3'- -CGCUGCCgGGCGUGGg-GCA--------GCUC-GUC- -5'
21406 3' -62.4 NC_004812.1 + 128436 0.66 0.677819
Target:  5'- gGCGAaGGCCaGguCCCgCGUggaGAGCAGg -3'
miRNA:   3'- -CGCUgCCGGgCguGGG-GCAg--CUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 152714 0.66 0.677819
Target:  5'- cGCGccgcCGcGCCCGCGCCuCUGgcugcgCGAGCu- -3'
miRNA:   3'- -CGCu---GC-CGGGCGUGG-GGCa-----GCUCGuc -5'
21406 3' -62.4 NC_004812.1 + 117792 0.66 0.677819
Target:  5'- cCGGCGcGCgCCGCAgcCCCCGacaccugCGGGCGa -3'
miRNA:   3'- cGCUGC-CG-GGCGU--GGGGCa------GCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 125929 0.66 0.677819
Target:  5'- uGUGGCGGCUCGU-CCgCGgggaCGAGCGa -3'
miRNA:   3'- -CGCUGCCGGGCGuGGgGCa---GCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 60451 0.66 0.677819
Target:  5'- gGCGACGGgCCCcacgacgGCCCCGaaGAGgAGg -3'
miRNA:   3'- -CGCUGCC-GGGcg-----UGGGGCagCUCgUC- -5'
21406 3' -62.4 NC_004812.1 + 69258 0.66 0.677819
Target:  5'- cCGACugcaGCCCGCGCUCCaugagccgcaucGUCGGGCc- -3'
miRNA:   3'- cGCUGc---CGGGCGUGGGG------------CAGCUCGuc -5'
21406 3' -62.4 NC_004812.1 + 58029 0.66 0.677819
Target:  5'- cUGACGGa-CGCGCCCCucGUgcUGGGCGGg -3'
miRNA:   3'- cGCUGCCggGCGUGGGG--CA--GCUCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.