miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21406 5' -50.5 NC_004812.1 + 5214 0.7 0.927739
Target:  5'- cGACUcCGaGGCCGAGCcggCGUCGGCCu -3'
miRNA:   3'- -UUGAuGUaCUGGUUCGa--GUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 14547 0.69 0.960101
Target:  5'- cGACcGCggGGgCGGGCUCGUCGcCCGg -3'
miRNA:   3'- -UUGaUGuaCUgGUUCGAGUAGCuGGC- -5'
21406 5' -50.5 NC_004812.1 + 16141 0.67 0.984799
Target:  5'- cAGCUGCGcGACCGGGa-CAUCGAgcuCCGg -3'
miRNA:   3'- -UUGAUGUaCUGGUUCgaGUAGCU---GGC- -5'
21406 5' -50.5 NC_004812.1 + 18896 0.67 0.989626
Target:  5'- cGCcGCGgaGGCCGAGCUCGUacagGGCCGc -3'
miRNA:   3'- uUGaUGUa-CUGGUUCGAGUAg---CUGGC- -5'
21406 5' -50.5 NC_004812.1 + 22263 0.66 0.990936
Target:  5'- gGGCcgACGcgGugCAGGCUC-UCGACCu -3'
miRNA:   3'- -UUGa-UGUa-CugGUUCGAGuAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 23603 0.67 0.982859
Target:  5'- uACUACGUGGCgGAGacgCAgUGGCCGg -3'
miRNA:   3'- uUGAUGUACUGgUUCga-GUaGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 33762 0.66 0.990936
Target:  5'- -cCUGCG-GGCCcucacGGGCUCggCGGCCGa -3'
miRNA:   3'- uuGAUGUaCUGG-----UUCGAGuaGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 39242 0.66 0.990936
Target:  5'- ---cGCGUGGCCAGGCgccCGUUGuCCa -3'
miRNA:   3'- uugaUGUACUGGUUCGa--GUAGCuGGc -5'
21406 5' -50.5 NC_004812.1 + 44003 0.66 0.992112
Target:  5'- uGC-ACAUGGCCGaggccagcaggaGGCUCcggCGGCCGc -3'
miRNA:   3'- uUGaUGUACUGGU------------UCGAGua-GCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 49589 0.68 0.973198
Target:  5'- gGGCUGC-UGGCgcagCAGGCgcgCAUCGGCCu -3'
miRNA:   3'- -UUGAUGuACUG----GUUCGa--GUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 53058 0.67 0.989626
Target:  5'- cAGCUGCAccGCCAGGCggcgcUCAagGGCCGc -3'
miRNA:   3'- -UUGAUGUacUGGUUCG-----AGUagCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 58707 0.76 0.687391
Target:  5'- --aUGC-UGACCAAGCUCAagcaCGACCGg -3'
miRNA:   3'- uugAUGuACUGGUUCGAGUa---GCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 59479 0.66 0.9941
Target:  5'- -cCUGCAUGAcggcCCGGGC-CGucUCGGCCa -3'
miRNA:   3'- uuGAUGUACU----GGUUCGaGU--AGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 63132 0.69 0.967109
Target:  5'- cGACUGCAUGGCCGAcaacCUgacCGUCGAgCGg -3'
miRNA:   3'- -UUGAUGUACUGGUUc---GA---GUAGCUgGC- -5'
21406 5' -50.5 NC_004812.1 + 65726 0.69 0.963723
Target:  5'- gAGCU-CGUGACCGucccggaggcgcAGCUCGUCGAggagcaCCGc -3'
miRNA:   3'- -UUGAuGUACUGGU------------UCGAGUAGCU------GGC- -5'
21406 5' -50.5 NC_004812.1 + 75543 0.66 0.992112
Target:  5'- ---cGCGUGGCCGAGUUCGUCcgggaGCUGc -3'
miRNA:   3'- uugaUGUACUGGUUCGAGUAGc----UGGC- -5'
21406 5' -50.5 NC_004812.1 + 78083 0.72 0.859676
Target:  5'- cGGCaGCcUGACCGAGCUgcUCGGCCGc -3'
miRNA:   3'- -UUGaUGuACUGGUUCGAguAGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 79008 0.67 0.986567
Target:  5'- cGCUGC-UGGCCGGGgaCGcccgCGACCGc -3'
miRNA:   3'- uUGAUGuACUGGUUCgaGUa---GCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 79258 0.69 0.967109
Target:  5'- cGACgccGCG-GGCCAggGGCUCGUCGuCCGu -3'
miRNA:   3'- -UUGa--UGUaCUGGU--UCGAGUAGCuGGC- -5'
21406 5' -50.5 NC_004812.1 + 79348 0.68 0.976944
Target:  5'- gAGCUcggGCcUGGCCGAGCUCGagcgcuucgaggcccUCGACgCGg -3'
miRNA:   3'- -UUGA---UGuACUGGUUCGAGU---------------AGCUG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.