miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21406 5' -50.5 NC_004812.1 + 142882 0.67 0.982859
Target:  5'- cGAgUACGgccucccgcUGACCGaggagcacaugcAGUUCGUCGACCGc -3'
miRNA:   3'- -UUgAUGU---------ACUGGU------------UCGAGUAGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 23603 0.67 0.982859
Target:  5'- uACUACGUGGCgGAGacgCAgUGGCCGg -3'
miRNA:   3'- uUGAUGUACUGgUUCga-GUaGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 109970 0.67 0.982859
Target:  5'- cGCUGC-UGuuuCCGGGCgcccgCGUCGACCc -3'
miRNA:   3'- uUGAUGuACu--GGUUCGa----GUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 79348 0.68 0.976944
Target:  5'- gAGCUcggGCcUGGCCGAGCUCGagcgcuucgaggcccUCGACgCGg -3'
miRNA:   3'- -UUGA---UGuACUGGUUCGAGU---------------AGCUG-GC- -5'
21406 5' -50.5 NC_004812.1 + 101796 0.68 0.973198
Target:  5'- -uCUGCAgcaccUGGCCcccAGGCUCG-CGGCCGg -3'
miRNA:   3'- uuGAUGU-----ACUGG---UUCGAGUaGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 49589 0.68 0.973198
Target:  5'- gGGCUGC-UGGCgcagCAGGCgcgCAUCGGCCu -3'
miRNA:   3'- -UUGAUGuACUG----GUUCGa--GUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 108071 0.68 0.970265
Target:  5'- cGGCUGCGUGAUCAc-CUCcUCGAUCGc -3'
miRNA:   3'- -UUGAUGUACUGGUucGAGuAGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 63132 0.69 0.967109
Target:  5'- cGACUGCAUGGCCGAcaacCUgacCGUCGAgCGg -3'
miRNA:   3'- -UUGAUGUACUGGUUc---GA---GUAGCUgGC- -5'
21406 5' -50.5 NC_004812.1 + 79258 0.69 0.967109
Target:  5'- cGACgccGCG-GGCCAggGGCUCGUCGuCCGu -3'
miRNA:   3'- -UUGa--UGUaCUGGU--UCGAGUAGCuGGC- -5'
21406 5' -50.5 NC_004812.1 + 65726 0.69 0.963723
Target:  5'- gAGCU-CGUGACCGucccggaggcgcAGCUCGUCGAggagcaCCGc -3'
miRNA:   3'- -UUGAuGUACUGGU------------UCGAGUAGCU------GGC- -5'
21406 5' -50.5 NC_004812.1 + 145668 0.69 0.960101
Target:  5'- gAGCUgGCGccGACCGAGCUCGUCcacggaugaGACCa -3'
miRNA:   3'- -UUGA-UGUa-CUGGUUCGAGUAG---------CUGGc -5'
21406 5' -50.5 NC_004812.1 + 14547 0.69 0.960101
Target:  5'- cGACcGCggGGgCGGGCUCGUCGcCCGg -3'
miRNA:   3'- -UUGaUGuaCUgGUUCGAGUAGCuGGC- -5'
21406 5' -50.5 NC_004812.1 + 98117 0.7 0.943146
Target:  5'- uACUACAUGGCCAAccagauccugcGCUacugCGACCa -3'
miRNA:   3'- uUGAUGUACUGGUU-----------CGAgua-GCUGGc -5'
21406 5' -50.5 NC_004812.1 + 100150 0.7 0.943146
Target:  5'- gGGCgGCggGGCgGGGCUCAUCGcGCCGc -3'
miRNA:   3'- -UUGaUGuaCUGgUUCGAGUAGC-UGGC- -5'
21406 5' -50.5 NC_004812.1 + 5214 0.7 0.927739
Target:  5'- cGACUcCGaGGCCGAGCcggCGUCGGCCu -3'
miRNA:   3'- -UUGAuGUaCUGGUUCGa--GUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 104388 0.71 0.92208
Target:  5'- cGCUACAUGGCCcuGGU--GUCGGCCa -3'
miRNA:   3'- uUGAUGUACUGGu-UCGagUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 91503 0.71 0.92208
Target:  5'- gGGCUugGcGGCCGAGC-CggCGGCCGg -3'
miRNA:   3'- -UUGAugUaCUGGUUCGaGuaGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 130723 0.72 0.875262
Target:  5'- cGACUcCGaGGCCGAGCggCGUCGGCCu -3'
miRNA:   3'- -UUGAuGUaCUGGUUCGa-GUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 78083 0.72 0.859676
Target:  5'- cGGCaGCcUGACCGAGCUgcUCGGCCGc -3'
miRNA:   3'- -UUGaUGuACUGGUUCGAguAGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 123259 0.73 0.834628
Target:  5'- gAugUAgGUGACCAcguugaggAGCUCGUCGGCgGc -3'
miRNA:   3'- -UugAUgUACUGGU--------UCGAGUAGCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.