miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21407 3' -55.8 NC_004812.1 + 97086 0.66 0.910675
Target:  5'- cGAGCGccuCGGcuaCCGCCCCcuguccgccGGGGGCCg -3'
miRNA:   3'- -UUUGCu--GUCa--GGCGGGGau-------CCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 97230 0.66 0.910675
Target:  5'- -uGCGugGGgccUCGCgCCCUGcGGGGCCg -3'
miRNA:   3'- uuUGCugUCa--GGCG-GGGAUcCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 106384 0.66 0.910073
Target:  5'- uGACGagguacaGCAGU-CGCUCCUcgcgcgacagcGGGGGGCCg -3'
miRNA:   3'- uUUGC-------UGUCAgGCGGGGA-----------UCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 122196 0.66 0.908252
Target:  5'- uGGugGGCGGgcugucugggcgCCGCCCCgggggcgggcgcGGGGGGCUc -3'
miRNA:   3'- -UUugCUGUCa-----------GGCGGGGa-----------UCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 153097 0.66 0.908252
Target:  5'- uGGugGGCGGgcugucugggcgCCGCCCCgggggcgggcgcGGGGGGCUc -3'
miRNA:   3'- -UUugCUGUCa-----------GGCGGGGa-----------UCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 72682 0.66 0.904548
Target:  5'- cGGCGAgAacGUCCGCgCC-GGGGGACa -3'
miRNA:   3'- uUUGCUgU--CAGGCGgGGaUCCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 99074 0.66 0.904548
Target:  5'- --uCGACGGUcCCGCaCgUGGcGGAGCCc -3'
miRNA:   3'- uuuGCUGUCA-GGCGgGgAUC-CCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 80799 0.66 0.904548
Target:  5'- -cAUGACGG-CCagGCCCUgGGGGGACa -3'
miRNA:   3'- uuUGCUGUCaGG--CGGGGaUCCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 44616 0.66 0.904548
Target:  5'- --cCGcCAGccccCCGCgCUUGGGGGGCCg -3'
miRNA:   3'- uuuGCuGUCa---GGCGgGGAUCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 1383 0.66 0.904548
Target:  5'- -cGCGACGGcCCGCCCCgc----GCCg -3'
miRNA:   3'- uuUGCUGUCaGGCGGGGaucccuUGG- -5'
21407 3' -55.8 NC_004812.1 + 46911 0.66 0.904548
Target:  5'- -cGCGGCGG-CCGCCgCCgcGGcGGACa -3'
miRNA:   3'- uuUGCUGUCaGGCGG-GGauCC-CUUGg -5'
21407 3' -55.8 NC_004812.1 + 32284 0.66 0.904548
Target:  5'- -cGCGACGGcCCGCCCCgc----GCCg -3'
miRNA:   3'- uuUGCUGUCaGGCGGGGaucccuUGG- -5'
21407 3' -55.8 NC_004812.1 + 81152 0.66 0.904548
Target:  5'- gGAGCaGACcGUCCGCCuCCgcGGcGACCc -3'
miRNA:   3'- -UUUG-CUGuCAGGCGG-GGauCCcUUGG- -5'
21407 3' -55.8 NC_004812.1 + 72072 0.66 0.902664
Target:  5'- gGGGCGGCGGcuguuucgCCGCCCCcgagcucguuugggcGGGGGCUg -3'
miRNA:   3'- -UUUGCUGUCa-------GGCGGGGau-------------CCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 120849 0.66 0.898186
Target:  5'- -uACGACGccUCC-CCCCUGcGGGGGCUg -3'
miRNA:   3'- uuUGCUGUc-AGGcGGGGAU-CCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 72582 0.66 0.898186
Target:  5'- --cCGACAccaacgCCGCCCCccaAGGaGGGCCg -3'
miRNA:   3'- uuuGCUGUca----GGCGGGGa--UCC-CUUGG- -5'
21407 3' -55.8 NC_004812.1 + 83980 0.66 0.898186
Target:  5'- gGGGCGucGCGGcCCGgCCCUccuuGGGGGGCg -3'
miRNA:   3'- -UUUGC--UGUCaGGCgGGGA----UCCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 58938 0.66 0.898186
Target:  5'- --uCGGCGGgggCCGCCuggCCUGccgugaggcuGGGGGCCg -3'
miRNA:   3'- uuuGCUGUCa--GGCGG---GGAU----------CCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 150705 0.66 0.897537
Target:  5'- -cGCGGCGGcUCCGCCCgCcGGcGGAcgggguauaugagGCCg -3'
miRNA:   3'- uuUGCUGUC-AGGCGGG-GaUC-CCU-------------UGG- -5'
21407 3' -55.8 NC_004812.1 + 25197 0.66 0.897537
Target:  5'- -cGCGGCGGcUCCGCCCgCcGGcGGAcgggguauaugagGCCg -3'
miRNA:   3'- uuUGCUGUC-AGGCGGG-GaUC-CCU-------------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.