miRNA display CGI


Results 21 - 40 of 480 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21407 5' -59.1 NC_004812.1 + 21966 0.66 0.832003
Target:  5'- gCCGuGGugcucGCGCgGGGAGGGGGGcagggccaggaugccGCCCuCGu -3'
miRNA:   3'- -GGC-CC-----UGCGgUCUUCCCCUU---------------UGGG-GC- -5'
21407 5' -59.1 NC_004812.1 + 100283 0.66 0.832003
Target:  5'- cCCGGGggccgagcacggacGCGCCGcccuccaggggcucGggGGGGAAgugcucaaacuGCUCCa -3'
miRNA:   3'- -GGCCC--------------UGCGGU--------------CuuCCCCUU-----------UGGGGc -5'
21407 5' -59.1 NC_004812.1 + 131641 0.66 0.828779
Target:  5'- -gGGGAgGgggaGGggGGGGggGuCCCCu -3'
miRNA:   3'- ggCCCUgCgg--UCuuCCCCuuU-GGGGc -5'
21407 5' -59.1 NC_004812.1 + 58411 0.66 0.828779
Target:  5'- gCCuGGAgGCUGGggGGGcggcGGGACCCgGc -3'
miRNA:   3'- -GGcCCUgCGGUCuuCCC----CUUUGGGgC- -5'
21407 5' -59.1 NC_004812.1 + 44153 0.66 0.828779
Target:  5'- gCC-GGACgGCCGGAGGGcgcucGGggGCCgagCCGg -3'
miRNA:   3'- -GGcCCUG-CGGUCUUCC-----CCuuUGG---GGC- -5'
21407 5' -59.1 NC_004812.1 + 6132 0.66 0.828779
Target:  5'- -gGGGAgGgggaGGggGGGGggGuCCCCu -3'
miRNA:   3'- ggCCCUgCgg--UCuuCCCCuuU-GGGGc -5'
21407 5' -59.1 NC_004812.1 + 62180 0.66 0.828779
Target:  5'- gCCGGGGgGCCGcGAacAGGGGGcgGACgUCu -3'
miRNA:   3'- -GGCCCUgCGGU-CU--UCCCCU--UUGgGGc -5'
21407 5' -59.1 NC_004812.1 + 50209 0.66 0.828779
Target:  5'- gCCGGGGcCGUgAGGccgAGcGGcGACCCCGa -3'
miRNA:   3'- -GGCCCU-GCGgUCU---UCcCCuUUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 102227 0.66 0.828779
Target:  5'- uCCGGGcuCGUCGGgcGGcccuGCCCCGg -3'
miRNA:   3'- -GGCCCu-GCGGUCuuCCccuuUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 129650 0.66 0.828779
Target:  5'- gCGGGGCGCCcccuGGGGcacGACUgCGg -3'
miRNA:   3'- gGCCCUGCGGucuuCCCCu--UUGGgGC- -5'
21407 5' -59.1 NC_004812.1 + 66953 0.66 0.828779
Target:  5'- -gGaGGAUGuCCuucuGGGGGAAgaGCCCCGa -3'
miRNA:   3'- ggC-CCUGC-GGucu-UCCCCUU--UGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 136472 0.66 0.828779
Target:  5'- gCgGGGGCGCCAu--GGGcGAcgcgGGCCUCGu -3'
miRNA:   3'- -GgCCCUGCGGUcuuCCC-CU----UUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 81954 0.66 0.828779
Target:  5'- aCCaGGGCGCCAucGGGGccaaGAGCgCCGa -3'
miRNA:   3'- -GGcCCUGCGGUcuUCCCc---UUUGgGGC- -5'
21407 5' -59.1 NC_004812.1 + 124435 0.66 0.828779
Target:  5'- cCCGGaGGCacCCGGuccgcgcGGGGgcGCCCCGc -3'
miRNA:   3'- -GGCC-CUGc-GGUCuu-----CCCCuuUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 120369 0.66 0.827969
Target:  5'- gCgGGGGCGCgCGGccGGGGGcgcguacgcgggcGACCgCGa -3'
miRNA:   3'- -GgCCCUGCG-GUCuuCCCCU-------------UUGGgGC- -5'
21407 5' -59.1 NC_004812.1 + 122624 0.66 0.827157
Target:  5'- gCCGGGcggcuCGCagugguagaagaGGAGcucGGGGAccgcGACCCCGg -3'
miRNA:   3'- -GGCCCu----GCGg-----------UCUU---CCCCU----UUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 19243 0.66 0.825528
Target:  5'- cCCGGGGCucgaacuccggccCCAGAaaggcgaauaucGGGGGcaGGGCCCCc -3'
miRNA:   3'- -GGCCCUGc------------GGUCU------------UCCCC--UUUGGGGc -5'
21407 5' -59.1 NC_004812.1 + 22326 0.66 0.823893
Target:  5'- gCCGGGGCuggaccugguucccCUAGAcucGGGGAagacGACCCCa -3'
miRNA:   3'- -GGCCCUGc-------------GGUCUu--CCCCU----UUGGGGc -5'
21407 5' -59.1 NC_004812.1 + 12169 0.66 0.820604
Target:  5'- gUCGGGGCcCCAGAAcGGcgcGGGAACUuCCGa -3'
miRNA:   3'- -GGCCCUGcGGUCUU-CC---CCUUUGG-GGC- -5'
21407 5' -59.1 NC_004812.1 + 122000 0.66 0.820604
Target:  5'- gCCGGGcgggacuuggGCGCCGGgcGGGacuuGGGCgCCGg -3'
miRNA:   3'- -GGCCC----------UGCGGUCuuCCCc---UUUGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.