miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21408 3' -50.3 NC_004812.1 + 91155 0.66 0.994597
Target:  5'- cGGGCGGUcCg--GGGGcCGGgGGGAc -3'
miRNA:   3'- aCCCGCCAaGauaCCCUuGUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 34446 0.66 0.994597
Target:  5'- gGGGUGGgauggUC-GUGGGAGgGGgAAGGg -3'
miRNA:   3'- aCCCGCCa----AGaUACCCUUgUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 156280 0.66 0.994597
Target:  5'- gGGGaCGGgag---GGGGACGAgGAGAc -3'
miRNA:   3'- aCCC-GCCaagauaCCCUUGUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 30772 0.66 0.994597
Target:  5'- gGGGaCGGgag---GGGGACGAgGAGAc -3'
miRNA:   3'- aCCC-GCCaagauaCCCUUGUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 45741 0.66 0.994431
Target:  5'- cGGGCGGgcuccgCggagcccgagGGGAgACGGCGAGGg -3'
miRNA:   3'- aCCCGCCaa----Gaua-------CCCU-UGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 115527 0.66 0.993999
Target:  5'- cGGGCGGggaguacggaggGGGGGCcuCGAGAg -3'
miRNA:   3'- aCCCGCCaagaua------CCCUUGuuGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 148526 0.66 0.993726
Target:  5'- gGGGCGGcgCgggccgccGGGcGCGGCGGGGu -3'
miRNA:   3'- aCCCGCCaaGaua-----CCCuUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 12828 0.66 0.993726
Target:  5'- gUGGGCGGggaagggCcgAUGGGGcGCGGgAGGAa -3'
miRNA:   3'- -ACCCGCCaa-----Ga-UACCCU-UGUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 80621 0.66 0.993726
Target:  5'- gUGGGgGGUcCgcgGUGGaGAGgGGCGGGGa -3'
miRNA:   3'- -ACCCgCCAaGa--UACC-CUUgUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 97982 0.66 0.993726
Target:  5'- gGGGCGGUgggccGGGAGgcACGGGGg -3'
miRNA:   3'- aCCCGCCAagauaCCCUUguUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 137978 0.66 0.993726
Target:  5'- gGGGCGGggUCgggGGGGGgGGgGGGGg -3'
miRNA:   3'- aCCCGCCa-AGauaCCCUUgUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 67792 0.66 0.993726
Target:  5'- cGGGCGGcUUCgggGGGGGCGGg---- -3'
miRNA:   3'- aCCCGCC-AAGauaCCCUUGUUguucu -5'
21408 3' -50.3 NC_004812.1 + 117625 0.66 0.993726
Target:  5'- gGGGCGGcgCgggccgccGGGcGCGGCGGGGu -3'
miRNA:   3'- aCCCGCCaaGaua-----CCCuUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 106774 0.66 0.993726
Target:  5'- gGGGCGGcgUCgg-GcGGGGCGcGCGGGAg -3'
miRNA:   3'- aCCCGCCa-AGauaC-CCUUGU-UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 135129 0.66 0.992747
Target:  5'- gGGGUGGggUguuUGGGGAgGACGAa- -3'
miRNA:   3'- aCCCGCCaaGau-ACCCUUgUUGUUcu -5'
21408 3' -50.3 NC_004812.1 + 5226 0.66 0.992747
Target:  5'- gGGGCGGgggCUcccGGGAGaagcACAAGAc -3'
miRNA:   3'- aCCCGCCaa-GAua-CCCUUgu--UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 114937 0.66 0.992747
Target:  5'- gGGGgGGUUg---GGGAaaguggacgcgGCGGCAAGAa -3'
miRNA:   3'- aCCCgCCAAgauaCCCU-----------UGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 36127 0.66 0.992747
Target:  5'- gGGGCGGgggCUcccGGGAGaagcACAAGAc -3'
miRNA:   3'- aCCCGCCaa-GAua-CCCUUgu--UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 126960 0.67 0.991764
Target:  5'- aUGGGCGGgggagagaagggAUGGGGAgGGgGAGGa -3'
miRNA:   3'- -ACCCGCCaaga--------UACCCUUgUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 135691 0.67 0.991649
Target:  5'- gGGGUGGUUgUgugccGUGGGGaaggggguccACGGCAGGu -3'
miRNA:   3'- aCCCGCCAAgA-----UACCCU----------UGUUGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.