miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21408 5' -58.7 NC_004812.1 + 50792 0.66 0.806431
Target:  5'- --------cGCGCCGccgccggccggagcCCCCACCCCCAa -3'
miRNA:   3'- acagcacaaUGCGGU--------------GGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 85432 0.66 0.806431
Target:  5'- ---gGUGUcGCGCUcuacggaauccuucGCCCUGCCCCCc -3'
miRNA:   3'- acagCACAaUGCGG--------------UGGGGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 333 0.66 0.803825
Target:  5'- cGUCGggagGUgcguccacgcgcuCGCCACCCuCACUCUCGg -3'
miRNA:   3'- aCAGCa---CAau-----------GCGGUGGG-GUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 31234 0.66 0.803825
Target:  5'- cGUCGggagGUgcguccacgcgcuCGCCACCCuCACUCUCGg -3'
miRNA:   3'- aCAGCa---CAau-----------GCGGUGGG-GUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 78870 0.66 0.800331
Target:  5'- aGggCGg---AgGCCGcCCCCACCCCCu -3'
miRNA:   3'- aCa-GCacaaUgCGGU-GGGGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 98191 0.66 0.800331
Target:  5'- gGcCGgGUccCGCCGCCCCcccaGCCUCCAg -3'
miRNA:   3'- aCaGCaCAauGCGGUGGGG----UGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 46979 0.66 0.800331
Target:  5'- aGUCGUcgcGCGCCagggcugcgaACgCCUGCCCCCGg -3'
miRNA:   3'- aCAGCAcaaUGCGG----------UG-GGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 58117 0.66 0.800331
Target:  5'- cGgCGccccGCGCCGCCCCACCCaCGa -3'
miRNA:   3'- aCaGCacaaUGCGGUGGGGUGGGgGU- -5'
21408 5' -58.7 NC_004812.1 + 57865 0.66 0.800331
Target:  5'- cUGUCGU----CGCCGCcgggggCCUGCCCCCGc -3'
miRNA:   3'- -ACAGCAcaauGCGGUG------GGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 38074 0.66 0.800331
Target:  5'- cGUC-UGggACGUguCCCCucucGCCCCCu -3'
miRNA:   3'- aCAGcACaaUGCGguGGGG----UGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 17040 0.66 0.800331
Target:  5'- gGUCGgcggGggGCGCCucgguCCCgGCCgCCGc -3'
miRNA:   3'- aCAGCa---CaaUGCGGu----GGGgUGGgGGU- -5'
21408 5' -58.7 NC_004812.1 + 41258 0.66 0.800331
Target:  5'- cGUUcgGUGUUugccCGCC-CCCgCugCCCCAa -3'
miRNA:   3'- aCAG--CACAAu---GCGGuGGG-GugGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 7173 0.66 0.800331
Target:  5'- cGUC-UGggACGUguCCCCucucGCCCCCu -3'
miRNA:   3'- aCAGcACaaUGCGguGGGG----UGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 114576 0.66 0.800331
Target:  5'- --aCGgagUugGUgGCCCUGCCCCCGg -3'
miRNA:   3'- acaGCacaAugCGgUGGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 26890 0.66 0.800331
Target:  5'- cGUCacGUacGCGCuCACCaCCACCUCCAg -3'
miRNA:   3'- aCAGcaCAa-UGCG-GUGG-GGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 143561 0.66 0.799453
Target:  5'- cUGUCGcugGggGCGaCCggggccgGCCCCgcgACCCCCGg -3'
miRNA:   3'- -ACAGCa--CaaUGC-GG-------UGGGG---UGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 138643 0.66 0.797694
Target:  5'- cGUCGg---GCGCCugacggccgccgucGCCCCgggcgACCCCCu -3'
miRNA:   3'- aCAGCacaaUGCGG--------------UGGGG-----UGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 135580 0.66 0.796812
Target:  5'- gGUCucgcgcaGCCACCCCaugcACCCCCGc -3'
miRNA:   3'- aCAGcacaaugCGGUGGGG----UGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 23380 0.66 0.791493
Target:  5'- cGcCGUGUccguCGCCACgaucgCCGCCCUCAa -3'
miRNA:   3'- aCaGCACAau--GCGGUGg----GGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 121077 0.66 0.791493
Target:  5'- cG-CGggcGUccCGCCcCCCCGCCCCUAa -3'
miRNA:   3'- aCaGCa--CAauGCGGuGGGGUGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.