miRNA display CGI


Results 21 - 40 of 491 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21409 3' -53.8 NC_004812.1 + 6243 0.66 0.970488
Target:  5'- cCCCGCg-GCCGUCucgcgccCGCGGUCg -3'
miRNA:   3'- -GGGCGagCGGCGGcuuuuu-GUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 52432 0.66 0.969902
Target:  5'- cCCCGCaUCGCCGCCcaucccccCGCccgcGUCg -3'
miRNA:   3'- -GGGCG-AGCGGCGGcuuuuu--GUGu---CAG- -5'
21409 3' -53.8 NC_004812.1 + 80383 0.66 0.969902
Target:  5'- uUCCGC-CGcCCGCCcccccuuccGCGCGGUCu -3'
miRNA:   3'- -GGGCGaGC-GGCGGcuuuu----UGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 67418 0.66 0.969307
Target:  5'- cCCCgGCUCccagacggcggggguGCCGgCGAGGAGCAgCAGg- -3'
miRNA:   3'- -GGG-CGAG---------------CGGCgGCUUUUUGU-GUCag -5'
21409 3' -53.8 NC_004812.1 + 33537 0.66 0.969307
Target:  5'- cCCCGCgagaccugCGCCGUcugcacggagcgcauCGAcGAGGCGCAGcUCu -3'
miRNA:   3'- -GGGCGa-------GCGGCG---------------GCU-UUUUGUGUC-AG- -5'
21409 3' -53.8 NC_004812.1 + 2636 0.66 0.969307
Target:  5'- cCCCGCgagaccugCGCCGUcugcacggagcgcauCGAcGAGGCGCAGcUCu -3'
miRNA:   3'- -GGGCGa-------GCGGCG---------------GCU-UUUUGUGUC-AG- -5'
21409 3' -53.8 NC_004812.1 + 20225 0.66 0.969307
Target:  5'- gCCCGCaacggcuagcgcgGCCGCCGGGAccUugGGUCc -3'
miRNA:   3'- -GGGCGag-----------CGGCGGCUUUuuGugUCAG- -5'
21409 3' -53.8 NC_004812.1 + 66538 0.66 0.968092
Target:  5'- aCCGCUCGCgcucgcaggCGCUGG---GCucCAGUCg -3'
miRNA:   3'- gGGCGAGCG---------GCGGCUuuuUGu-GUCAG- -5'
21409 3' -53.8 NC_004812.1 + 156600 0.66 0.968092
Target:  5'- uUCGCgcgcgCGCCGCCGggGgagGGCcCGGg- -3'
miRNA:   3'- gGGCGa----GCGGCGGCuuU---UUGuGUCag -5'
21409 3' -53.8 NC_004812.1 + 114025 0.66 0.968092
Target:  5'- aCgGuCUCGCCGUCGGc--GCGCGcGUCg -3'
miRNA:   3'- gGgC-GAGCGGCGGCUuuuUGUGU-CAG- -5'
21409 3' -53.8 NC_004812.1 + 20260 0.66 0.968092
Target:  5'- cUCCGagagCGCCGCCucuAGGACGaGGUCg -3'
miRNA:   3'- -GGGCga--GCGGCGGcu-UUUUGUgUCAG- -5'
21409 3' -53.8 NC_004812.1 + 58223 0.66 0.968092
Target:  5'- cCCCGCggccgccgCGCCGCCcGAGGAC-CcGUa -3'
miRNA:   3'- -GGGCGa-------GCGGCGGcUUUUUGuGuCAg -5'
21409 3' -53.8 NC_004812.1 + 112767 0.66 0.968092
Target:  5'- gCCCGgaCUCGgCGCCGcGAGccGCGCGG-Cg -3'
miRNA:   3'- -GGGC--GAGCgGCGGCuUUU--UGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 4933 0.66 0.968092
Target:  5'- gCCCGCggaggCGgCGCUGGAGGGCggccgGCGGg- -3'
miRNA:   3'- -GGGCGa----GCgGCGGCUUUUUG-----UGUCag -5'
21409 3' -53.8 NC_004812.1 + 143727 0.66 0.968092
Target:  5'- aCCGagCGCCGCUGAAAc-CGCcGUCg -3'
miRNA:   3'- gGGCgaGCGGCGGCUUUuuGUGuCAG- -5'
21409 3' -53.8 NC_004812.1 + 130441 0.66 0.968092
Target:  5'- gCCCGCggaggCGgCGCUGGAGGGCggccgGCGGg- -3'
miRNA:   3'- -GGGCGa----GCgGCGGCUUUUUG-----UGUCag -5'
21409 3' -53.8 NC_004812.1 + 84706 0.66 0.968092
Target:  5'- gCCCGCggcgccgCGCCGCCcggcc-CGCcGUCg -3'
miRNA:   3'- -GGGCGa------GCGGCGGcuuuuuGUGuCAG- -5'
21409 3' -53.8 NC_004812.1 + 81005 0.66 0.968092
Target:  5'- gCUCGCgaUCGgCGCCGcGAccagcGCGCGGUCc -3'
miRNA:   3'- -GGGCG--AGCgGCGGCuUUu----UGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 111410 0.66 0.968092
Target:  5'- gCCGuCUCGCUGCCGGcc-GCGCcGcCg -3'
miRNA:   3'- gGGC-GAGCGGCGGCUuuuUGUGuCaG- -5'
21409 3' -53.8 NC_004812.1 + 30685 0.66 0.968092
Target:  5'- cCCCGCggacgaGCCGCCacacGAAGAUGgAGUUg -3'
miRNA:   3'- -GGGCGag----CGGCGGc---UUUUUGUgUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.