miRNA display CGI


Results 21 - 40 of 748 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21409 5' -66.3 NC_004812.1 + 156132 0.66 0.510104
Target:  5'- -gGGGUGacgGGCCGCgCGGacgcggggcgcGGGAcgcgcgggaccGGGGCc -3'
miRNA:   3'- ggCCCGCa--CCGGCG-GCC-----------CCCU-----------UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 77943 0.66 0.510104
Target:  5'- uCgGGGUGggucgGGgUGgCGGGGGcgaaGAGGGUg -3'
miRNA:   3'- -GgCCCGCa----CCgGCgGCCCCC----UUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 115335 0.66 0.510104
Target:  5'- gUGGGCGgcguuggGGCaG-CGGGGGc-GGGCa -3'
miRNA:   3'- gGCCCGCa------CCGgCgGCCCCCuuCCCG- -5'
21409 5' -66.3 NC_004812.1 + 152512 0.66 0.510104
Target:  5'- gCCGGGgaGgacGGCCccgccgggGCCGcGGGGGAGGa- -3'
miRNA:   3'- -GGCCCg-Ca--CCGG--------CGGC-CCCCUUCCcg -5'
21409 5' -66.3 NC_004812.1 + 82987 0.66 0.510104
Target:  5'- cCCGcGGCGUGGgaGaCGGGcGccGGGGCg -3'
miRNA:   3'- -GGC-CCGCACCggCgGCCC-CcuUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 54796 0.66 0.510104
Target:  5'- gUCGGGCcccccGGCCGCgagccUGGGGGccAGGuGCu -3'
miRNA:   3'- -GGCCCGca---CCGGCG-----GCCCCCu-UCC-CG- -5'
21409 5' -66.3 NC_004812.1 + 99389 0.66 0.510104
Target:  5'- gCCGugucGGCGcugcGGCgGCUGGGGucgucGGGGCg -3'
miRNA:   3'- -GGC----CCGCa---CCGgCGGCCCCcu---UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 94627 0.66 0.510104
Target:  5'- gCCGGGCGUugGGaCCGgCGacgaGGGcgcGGGCg -3'
miRNA:   3'- -GGCCCGCA--CC-GGCgGCc---CCCuu-CCCG- -5'
21409 5' -66.3 NC_004812.1 + 27003 0.66 0.510104
Target:  5'- gCCGGGgaGgacGGCCccgccgggGCCGcGGGGGAGGa- -3'
miRNA:   3'- -GGCCCg-Ca--CCGG--------CGGC-CCCCUUCCcg -5'
21409 5' -66.3 NC_004812.1 + 55668 0.66 0.510104
Target:  5'- gCGGaGCaggccguccaGUGGCUGUCGGuGGcGguGGGCg -3'
miRNA:   3'- gGCC-CG----------CACCGGCGGCC-CC-CuuCCCG- -5'
21409 5' -66.3 NC_004812.1 + 146001 0.66 0.510104
Target:  5'- aCCGGGgGU-GCgGCUcuaacgacgGGGaGGAAGaGGCg -3'
miRNA:   3'- -GGCCCgCAcCGgCGG---------CCC-CCUUC-CCG- -5'
21409 5' -66.3 NC_004812.1 + 124581 0.66 0.510104
Target:  5'- gCGGGCcugGaGCCcCCGGGGGGc-GGCc -3'
miRNA:   3'- gGCCCGca-C-CGGcGGCCCCCUucCCG- -5'
21409 5' -66.3 NC_004812.1 + 30624 0.66 0.510104
Target:  5'- -gGGGUGacgGGCCGCgCGGacgcggggcgcGGGAcgcgcgggaccGGGGCc -3'
miRNA:   3'- ggCCCGCa--CCGGCG-GCC-----------CCCU-----------UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 81800 0.66 0.509209
Target:  5'- gCCGgcGGCGUcGGCC-CCGGGcuccaGGAGcgugaucGGGCg -3'
miRNA:   3'- -GGC--CCGCA-CCGGcGGCCC-----CCUU-------CCCG- -5'
21409 5' -66.3 NC_004812.1 + 27885 0.66 0.509209
Target:  5'- gCUGGGuCGgugGGCCcggggcgagcccgGUCGGGGaGAccGGGCg -3'
miRNA:   3'- -GGCCC-GCa--CCGG-------------CGGCCCC-CUu-CCCG- -5'
21409 5' -66.3 NC_004812.1 + 67251 0.66 0.504744
Target:  5'- gCCGGGgacugcggcgucUGUGGgCGCgGGuGGGuccaucguacgcggcGGGGGCg -3'
miRNA:   3'- -GGCCC------------GCACCgGCGgCC-CCC---------------UUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 75138 0.66 0.504744
Target:  5'- -gGGcGCGUGuacGCCGUCGucGGGGAggcccccgaucgccuGGGGCc -3'
miRNA:   3'- ggCC-CGCAC---CGGCGGC--CCCCU---------------UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 7983 0.66 0.501185
Target:  5'- -aGGcGCGcGGgCGCCGGucaGggGGGCg -3'
miRNA:   3'- ggCC-CGCaCCgGCGGCCcc-CuuCCCG- -5'
21409 5' -66.3 NC_004812.1 + 93466 0.66 0.501185
Target:  5'- gCCGcGGCGgcucccccuCCcCCGGGGGccgagGAGGGCg -3'
miRNA:   3'- -GGC-CCGCacc------GGcGGCCCCC-----UUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 84692 0.66 0.501185
Target:  5'- uCgGGGCcaGGCCcgcaCCGGGGGAcgcgucggacGGcGGCu -3'
miRNA:   3'- -GgCCCGcaCCGGc---GGCCCCCU----------UC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.