miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21410 3' -56.6 NC_004812.1 + 39519 0.67 0.858362
Target:  5'- gCCUCCCGGuaauggacgcGaGGGGCGGg--GgagCGGGCg -3'
miRNA:   3'- -GGAGGGCC----------C-CCCCGUCauaCa--GUUUG- -5'
21410 3' -56.6 NC_004812.1 + 8618 0.67 0.858362
Target:  5'- gCCUCCCGGuaauggacgcGaGGGGCGGg--GgagCGGGCg -3'
miRNA:   3'- -GGAGGGCC----------C-CCCCGUCauaCa--GUUUG- -5'
21410 3' -56.6 NC_004812.1 + 91111 0.67 0.856063
Target:  5'- gCCUgCCGGccguggggucgcuuGGGGGCGGggccgGUCGggGACg -3'
miRNA:   3'- -GGAgGGCC--------------CCCCCGUCaua--CAGU--UUG- -5'
21410 3' -56.6 NC_004812.1 + 139801 0.67 0.850628
Target:  5'- uCCUCCuCGGcGGGGGUcgaGGUGgccaugGUCGc-- -3'
miRNA:   3'- -GGAGG-GCC-CCCCCG---UCAUa-----CAGUuug -5'
21410 3' -56.6 NC_004812.1 + 107876 0.67 0.850628
Target:  5'- ---gCCGGGGGGGCGGUc-GUCc--- -3'
miRNA:   3'- ggagGGCCCCCCCGUCAuaCAGuuug -5'
21410 3' -56.6 NC_004812.1 + 77441 0.67 0.849845
Target:  5'- gCUCCCGcagcagcucggccGGGGGGCuc-GUGgCGAGCg -3'
miRNA:   3'- gGAGGGC-------------CCCCCCGucaUACaGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 5470 0.67 0.842701
Target:  5'- aCCagggCCaCGGGGGGGCgAGg--GUCAc-- -3'
miRNA:   3'- -GGa---GG-GCCCCCCCG-UCauaCAGUuug -5'
21410 3' -56.6 NC_004812.1 + 36371 0.67 0.842701
Target:  5'- aCCagggCCaCGGGGGGGCgAGg--GUCAc-- -3'
miRNA:   3'- -GGa---GG-GCCCCCCCG-UCauaCAGUuug -5'
21410 3' -56.6 NC_004812.1 + 96476 0.67 0.842701
Target:  5'- cCCUCCUGGaGGGGCAGgacacgccgcUGgcgCGGGCc -3'
miRNA:   3'- -GGAGGGCCcCCCCGUCau--------ACa--GUUUG- -5'
21410 3' -56.6 NC_004812.1 + 30396 0.68 0.817818
Target:  5'- uCCUCCgGGGGcGcGGCGGccu-UCAGGCa -3'
miRNA:   3'- -GGAGGgCCCC-C-CCGUCauacAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 45454 0.68 0.817818
Target:  5'- gCUCcgCCGGGGGGGCgAGgagccCGAGCg -3'
miRNA:   3'- gGAG--GGCCCCCCCG-UCauacaGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 46516 0.68 0.810053
Target:  5'- gCCcCCCGGGGGGGCccacggggccucuccGUAcuccccGUCGGGCc -3'
miRNA:   3'- -GGaGGGCCCCCCCGu--------------CAUa-----CAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 67764 0.68 0.800388
Target:  5'- -gUCCCGGGGGaGGCGGcggcccgGggcgCGGGCg -3'
miRNA:   3'- ggAGGGCCCCC-CCGUCaua----Ca---GUUUG- -5'
21410 3' -56.6 NC_004812.1 + 111621 0.68 0.791445
Target:  5'- aCCUCCUGaacuacGcGGGGCGcGUgGUGUCGAGCg -3'
miRNA:   3'- -GGAGGGCc-----C-CCCCGU-CA-UACAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 72556 0.69 0.773144
Target:  5'- aCCgcgCCuCGGGGGGGCGccgGUGUaccGGCg -3'
miRNA:   3'- -GGa--GG-GCCCCCCCGUca-UACAgu-UUG- -5'
21410 3' -56.6 NC_004812.1 + 91619 0.69 0.773144
Target:  5'- --aCCCGGGGGGGgAGcuguccAUGUCGcuCg -3'
miRNA:   3'- ggaGGGCCCCCCCgUCa-----UACAGUuuG- -5'
21410 3' -56.6 NC_004812.1 + 116298 0.69 0.763804
Target:  5'- gUCUCUgugguaCGGGGGGGCGGccguUGUCGc-- -3'
miRNA:   3'- -GGAGG------GCCCCCCCGUCau--ACAGUuug -5'
21410 3' -56.6 NC_004812.1 + 110105 0.69 0.763804
Target:  5'- cCCcCCCGGGGGGcGCGGgaga--AAACg -3'
miRNA:   3'- -GGaGGGCCCCCC-CGUCauacagUUUG- -5'
21410 3' -56.6 NC_004812.1 + 100309 0.69 0.762863
Target:  5'- cCCUCCaggggcuCGGGGGGGaAGUGc-UCAAACu -3'
miRNA:   3'- -GGAGG-------GCCCCCCCgUCAUacAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 113253 0.69 0.744787
Target:  5'- gCUCgCGGGGGGGguGgacguuuucGUCAgcGACg -3'
miRNA:   3'- gGAGgGCCCCCCCguCaua------CAGU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.