miRNA display CGI


Results 21 - 40 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21410 5' -62 NC_004812.1 + 93939 0.66 0.659049
Target:  5'- gUGCaCGGCGAC-GCGCCGucccucgGGCGUUAg -3'
miRNA:   3'- gACGaGCCGUUGcCGCGGC-------UCGCGGU- -5'
21410 5' -62 NC_004812.1 + 16202 0.66 0.654126
Target:  5'- -gGCggCGGCGACGGUgggggugguguccguGgCGAGCGCg- -3'
miRNA:   3'- gaCGa-GCCGUUGCCG---------------CgGCUCGCGgu -5'
21410 5' -62 NC_004812.1 + 85322 0.66 0.650186
Target:  5'- -gGCUCGGU---GGCGCCuGGCGgCGa -3'
miRNA:   3'- gaCGAGCCGuugCCGCGGcUCGCgGU- -5'
21410 5' -62 NC_004812.1 + 7859 0.66 0.650186
Target:  5'- -gGgUCGGUcguAGCGGCGCCccGCGCg- -3'
miRNA:   3'- gaCgAGCCG---UUGCCGCGGcuCGCGgu -5'
21410 5' -62 NC_004812.1 + 134438 0.66 0.650186
Target:  5'- -cGCUCcGCcgauccgcACGGCGCCGccaaccgccugcGGCGCCu -3'
miRNA:   3'- gaCGAGcCGu-------UGCCGCGGC------------UCGCGGu -5'
21410 5' -62 NC_004812.1 + 105072 0.66 0.650186
Target:  5'- -cGCacacUGGCccccCGGCGCCGcuGCGCCGg -3'
miRNA:   3'- gaCGa---GCCGuu--GCCGCGGCu-CGCGGU- -5'
21410 5' -62 NC_004812.1 + 125722 0.66 0.650186
Target:  5'- -cGCggGGC-GCGGgGCCGcGCGCUg -3'
miRNA:   3'- gaCGagCCGuUGCCgCGGCuCGCGGu -5'
21410 5' -62 NC_004812.1 + 44323 0.66 0.650186
Target:  5'- -aGCUCGGCccgGGCgGGCGCggcccaGAGCGgCGc -3'
miRNA:   3'- gaCGAGCCG---UUG-CCGCGg-----CUCGCgGU- -5'
21410 5' -62 NC_004812.1 + 144948 0.66 0.650186
Target:  5'- -cGCUCGcCGGCGGaCGCCccgugcgcggcGAGCGUCu -3'
miRNA:   3'- gaCGAGCcGUUGCC-GCGG-----------CUCGCGGu -5'
21410 5' -62 NC_004812.1 + 15922 0.66 0.650186
Target:  5'- -cGaCUCGGCcGCGGUcgaccccgcccuGCCGGGCuucgGCCGg -3'
miRNA:   3'- gaC-GAGCCGuUGCCG------------CGGCUCG----CGGU- -5'
21410 5' -62 NC_004812.1 + 86730 0.66 0.650186
Target:  5'- -gGC-CGGacgaCGACGGCGaCC-AGCGCCGg -3'
miRNA:   3'- gaCGaGCC----GUUGCCGC-GGcUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 71824 0.66 0.650186
Target:  5'- -gGCggaagggggaGGguGCGGCgGCCGGGCgGCCGc -3'
miRNA:   3'- gaCGag--------CCguUGCCG-CGGCUCG-CGGU- -5'
21410 5' -62 NC_004812.1 + 59454 0.66 0.650186
Target:  5'- -cGCUCGGUcGCGGCGCgGuaCGUCu -3'
miRNA:   3'- gaCGAGCCGuUGCCGCGgCucGCGGu -5'
21410 5' -62 NC_004812.1 + 122700 0.66 0.650186
Target:  5'- -aGCUCGGCGuggaggcggGCGGCgaucgcgacgGCCGAGUccugGCUg -3'
miRNA:   3'- gaCGAGCCGU---------UGCCG----------CGGCUCG----CGGu -5'
21410 5' -62 NC_004812.1 + 117817 0.66 0.650186
Target:  5'- cCUGCgggCGacccucgagaucGCGACGcgacGCGCgGGGCGCCGc -3'
miRNA:   3'- -GACGa--GC------------CGUUGC----CGCGgCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 82276 0.66 0.650186
Target:  5'- cCUGCUCGuCGACguucgGGCGCuCGAG-GCCc -3'
miRNA:   3'- -GACGAGCcGUUG-----CCGCG-GCUCgCGGu -5'
21410 5' -62 NC_004812.1 + 48250 0.66 0.650186
Target:  5'- cCUGCagcgCGGCGACGuCGuCCGcGCGCUc -3'
miRNA:   3'- -GACGa---GCCGUUGCcGC-GGCuCGCGGu -5'
21410 5' -62 NC_004812.1 + 106224 0.66 0.650186
Target:  5'- uCUGCgCGGUGGugcacgcgccccCGGCGUCGggGGCGCCc -3'
miRNA:   3'- -GACGaGCCGUU------------GCCGCGGC--UCGCGGu -5'
21410 5' -62 NC_004812.1 + 148718 0.66 0.650186
Target:  5'- cCUGCgggCGacccucgagaucGCGACGcgacGCGCgGGGCGCCGc -3'
miRNA:   3'- -GACGa--GC------------CGUUGC----CGCGgCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 50550 0.66 0.650186
Target:  5'- aUGCUgcGCGACcGCuggagccucgugGCCGAGCGCCGg -3'
miRNA:   3'- gACGAgcCGUUGcCG------------CGGCUCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.