miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21411 3' -53.8 NC_004812.1 + 110421 0.67 0.948954
Target:  5'- gGGCGAGcc---GUaCCGCGUguucgCGUGGa -3'
miRNA:   3'- gCCGCUCuauuaCA-GGCGCGa----GCACC- -5'
21411 3' -53.8 NC_004812.1 + 115901 0.67 0.944617
Target:  5'- gGGaCGAGAUuccccUGggggaCCGCggGCUCGUGGa -3'
miRNA:   3'- gCC-GCUCUAuu---ACa----GGCG--CGAGCACC- -5'
21411 3' -53.8 NC_004812.1 + 101400 0.67 0.944617
Target:  5'- aCGGCGuGGUAGggggucGUCCGCaGCUgGcGGu -3'
miRNA:   3'- -GCCGCuCUAUUa-----CAGGCG-CGAgCaCC- -5'
21411 3' -53.8 NC_004812.1 + 34367 0.68 0.940046
Target:  5'- cCGGCGGGGUuuUG-CCGCGC-CGc-- -3'
miRNA:   3'- -GCCGCUCUAuuACaGGCGCGaGCacc -5'
21411 3' -53.8 NC_004812.1 + 54161 0.68 0.940046
Target:  5'- gCGGCGGGAcac-GUaCCGCGCccgCGUGu -3'
miRNA:   3'- -GCCGCUCUauuaCA-GGCGCGa--GCACc -5'
21411 3' -53.8 NC_004812.1 + 75648 0.68 0.940046
Target:  5'- gCGGCGGuccGAgagGUGUUgGCGgaCGUGGa -3'
miRNA:   3'- -GCCGCU---CUau-UACAGgCGCgaGCACC- -5'
21411 3' -53.8 NC_004812.1 + 139953 0.68 0.940046
Target:  5'- gGGCGGGGggccggGagCGCGCggCGUGGc -3'
miRNA:   3'- gCCGCUCUauua--CagGCGCGa-GCACC- -5'
21411 3' -53.8 NC_004812.1 + 124683 0.68 0.935239
Target:  5'- cCGGgGAGcgAGcGgCCGCggucGCUCGUGGa -3'
miRNA:   3'- -GCCgCUCuaUUaCaGGCG----CGAGCACC- -5'
21411 3' -53.8 NC_004812.1 + 74372 0.68 0.930194
Target:  5'- gCGGCGGGGUcccGcCCGCGCcCGUuuGGg -3'
miRNA:   3'- -GCCGCUCUAuuaCaGGCGCGaGCA--CC- -5'
21411 3' -53.8 NC_004812.1 + 94117 0.68 0.930194
Target:  5'- cCGGCGGGcgcgugGUCCGCGC-CGg-- -3'
miRNA:   3'- -GCCGCUCuauua-CAGGCGCGaGCacc -5'
21411 3' -53.8 NC_004812.1 + 28893 0.68 0.92491
Target:  5'- uGGCccccGAGcug--GUCCGCGC-CGUGGc -3'
miRNA:   3'- gCCG----CUCuauuaCAGGCGCGaGCACC- -5'
21411 3' -53.8 NC_004812.1 + 44584 0.68 0.92491
Target:  5'- uCGGCGuaggcccgcgacAGGUGGUGcucguggcCCGCGUccUCGUGGg -3'
miRNA:   3'- -GCCGC------------UCUAUUACa-------GGCGCG--AGCACC- -5'
21411 3' -53.8 NC_004812.1 + 142422 0.68 0.919388
Target:  5'- gCGGCGAcgcaguUGUCCGCGCgUCGg-- -3'
miRNA:   3'- -GCCGCUcuauu-ACAGGCGCG-AGCacc -5'
21411 3' -53.8 NC_004812.1 + 89062 0.68 0.919388
Target:  5'- gCGGCGAGAgc-UGcugCaCGCGCgcCGUGGc -3'
miRNA:   3'- -GCCGCUCUauuACa--G-GCGCGa-GCACC- -5'
21411 3' -53.8 NC_004812.1 + 79435 0.68 0.913627
Target:  5'- gGGCGGGGUuuggGGUGgcgccuUCCGCGCggCGgcgGGg -3'
miRNA:   3'- gCCGCUCUA----UUAC------AGGCGCGa-GCa--CC- -5'
21411 3' -53.8 NC_004812.1 + 118791 0.68 0.913627
Target:  5'- gCGGCGAGAUccccgaggAGUGcauggCCGUGUaucgggaccUCGUGGc -3'
miRNA:   3'- -GCCGCUCUA--------UUACa----GGCGCG---------AGCACC- -5'
21411 3' -53.8 NC_004812.1 + 97321 0.69 0.901399
Target:  5'- gCGGCGGGcgGGUG-CCGCGCgcccgCGa-- -3'
miRNA:   3'- -GCCGCUCuaUUACaGGCGCGa----GCacc -5'
21411 3' -53.8 NC_004812.1 + 74345 0.69 0.901399
Target:  5'- uGGCGAGccUGcgG-CgCGCGCUgGUGGg -3'
miRNA:   3'- gCCGCUCu-AUuaCaG-GCGCGAgCACC- -5'
21411 3' -53.8 NC_004812.1 + 16212 0.69 0.894276
Target:  5'- aCGGUgGGGGUGGUGUCCguggcgaGCGCggCGUuGGg -3'
miRNA:   3'- -GCCG-CUCUAUUACAGG-------CGCGa-GCA-CC- -5'
21411 3' -53.8 NC_004812.1 + 125108 0.69 0.888242
Target:  5'- gCGGCG-GAUcggGUCCGCGCUaccGGa -3'
miRNA:   3'- -GCCGCuCUAuuaCAGGCGCGAgcaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.