miRNA display CGI


Results 21 - 40 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21411 5' -60 NC_004812.1 + 134859 0.66 0.743693
Target:  5'- cGACgGCGCGuCGGCGGCAGaCgccccCCGGu -3'
miRNA:   3'- -CUGgUGUGC-GUCGUCGUC-Gacc--GGCC- -5'
21411 5' -60 NC_004812.1 + 25633 0.66 0.743693
Target:  5'- -cCCGCGC-CAGCuGGCccuGCUGGCCu- -3'
miRNA:   3'- cuGGUGUGcGUCG-UCGu--CGACCGGcc -5'
21411 5' -60 NC_004812.1 + 96032 0.66 0.743693
Target:  5'- gGACCugGaCGCGGguGCGcauGCUccGCCGGc -3'
miRNA:   3'- -CUGGugU-GCGUCguCGU---CGAc-CGGCC- -5'
21411 5' -60 NC_004812.1 + 144924 0.66 0.743693
Target:  5'- uACCACcCGCAGCugcccgaguGCcGCUcGCCGGc -3'
miRNA:   3'- cUGGUGuGCGUCGu--------CGuCGAcCGGCC- -5'
21411 5' -60 NC_004812.1 + 74747 0.66 0.743693
Target:  5'- gGAgCGCGCGCAGCuGCucGCgcgcGGCCc- -3'
miRNA:   3'- -CUgGUGUGCGUCGuCGu-CGa---CCGGcc -5'
21411 5' -60 NC_004812.1 + 109132 0.66 0.743693
Target:  5'- aGAcCCGgACcCGGCGGCGGCgacGGaCCGGc -3'
miRNA:   3'- -CU-GGUgUGcGUCGUCGUCGa--CC-GGCC- -5'
21411 5' -60 NC_004812.1 + 136768 0.66 0.743693
Target:  5'- gGACCGCcucugucagAUcCAGgAGCuGCUGGCCGa -3'
miRNA:   3'- -CUGGUG---------UGcGUCgUCGuCGACCGGCc -5'
21411 5' -60 NC_004812.1 + 151141 0.66 0.743693
Target:  5'- -cCCGCGC-CAGCuGGCccuGCUGGCCu- -3'
miRNA:   3'- cuGGUGUGcGUCG-UCGu--CGACCGGcc -5'
21411 5' -60 NC_004812.1 + 56586 0.66 0.73988
Target:  5'- cGGCCGcCAUGCAGCGacgaucgcGCGGCgcgagcucccugaGGCUGGc -3'
miRNA:   3'- -CUGGU-GUGCGUCGU--------CGUCGa------------CCGGCC- -5'
21411 5' -60 NC_004812.1 + 105062 0.66 0.737967
Target:  5'- cGGCCGCGgGC-GCAcacuggccccccggcGCcGCUGcGCCGGg -3'
miRNA:   3'- -CUGGUGUgCGuCGU---------------CGuCGAC-CGGCC- -5'
21411 5' -60 NC_004812.1 + 108617 0.66 0.734133
Target:  5'- cGugCAcCACGaGGCGcGCGuGCUGGCCGc -3'
miRNA:   3'- -CugGU-GUGCgUCGU-CGU-CGACCGGCc -5'
21411 5' -60 NC_004812.1 + 59175 0.66 0.734133
Target:  5'- cGGCUcaGCA-GCuGCAGCAGCgGGCaGGg -3'
miRNA:   3'- -CUGG--UGUgCGuCGUCGUCGaCCGgCC- -5'
21411 5' -60 NC_004812.1 + 74096 0.66 0.734133
Target:  5'- -cCCGCAU-CAGCAGCgccccgAGCUugucggugacGGCCGGg -3'
miRNA:   3'- cuGGUGUGcGUCGUCG------UCGA----------CCGGCC- -5'
21411 5' -60 NC_004812.1 + 110309 0.66 0.734133
Target:  5'- cGCC-CGCGCGGCccgccGCGGCcuccGGCCGc -3'
miRNA:   3'- cUGGuGUGCGUCGu----CGUCGa---CCGGCc -5'
21411 5' -60 NC_004812.1 + 59393 0.66 0.734133
Target:  5'- aGGCCcCACGCAGCGcGUGGCaccGCCaGGa -3'
miRNA:   3'- -CUGGuGUGCGUCGU-CGUCGac-CGG-CC- -5'
21411 5' -60 NC_004812.1 + 107950 0.66 0.734133
Target:  5'- cGGCCAuCGCGCGGCgaGGC-GCgGGaUCGGa -3'
miRNA:   3'- -CUGGU-GUGCGUCG--UCGuCGaCC-GGCC- -5'
21411 5' -60 NC_004812.1 + 99456 0.66 0.734133
Target:  5'- gGACCGCgucGCGCAGCcccagcaccgcGGCGGCguaccUGGCgGa -3'
miRNA:   3'- -CUGGUG---UGCGUCG-----------UCGUCG-----ACCGgCc -5'
21411 5' -60 NC_004812.1 + 74384 0.66 0.734133
Target:  5'- cGGCCGaacgGCGCuuCGGC-GCgGGCCGGg -3'
miRNA:   3'- -CUGGUg---UGCGucGUCGuCGaCCGGCC- -5'
21411 5' -60 NC_004812.1 + 79853 0.66 0.734133
Target:  5'- uGACCAgggugUACGaCAGCGGCcGCcgGGCCcaGGg -3'
miRNA:   3'- -CUGGU-----GUGC-GUCGUCGuCGa-CCGG--CC- -5'
21411 5' -60 NC_004812.1 + 129235 0.66 0.734133
Target:  5'- gGACCugGgGCGGUacaucGGCcacCUGGCUGGg -3'
miRNA:   3'- -CUGGugUgCGUCG-----UCGuc-GACCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.