miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21412 3' -53 NC_004812.1 + 121598 0.66 0.975238
Target:  5'- gGCCCCCgccgagCUCGCcgACCUCAa- -3'
miRNA:   3'- -CGGGGGacaaa-GAGUGcaUGGAGUgg -5'
21412 3' -53 NC_004812.1 + 120875 0.66 0.975238
Target:  5'- gGCCCCgcagggggCUGggUCggggcCGCGUGCCgaccccgCGCCc -3'
miRNA:   3'- -CGGGG--------GACaaAGa----GUGCAUGGa------GUGG- -5'
21412 3' -53 NC_004812.1 + 93815 0.66 0.975238
Target:  5'- aGCCCCCcgGggaCUCGCGcaggGCCgcgGCCa -3'
miRNA:   3'- -CGGGGGa-CaaaGAGUGCa---UGGag-UGG- -5'
21412 3' -53 NC_004812.1 + 151776 0.66 0.975238
Target:  5'- gGCCCCgcagggggCUGggUCggggcCGCGUGCCgaccccgCGCCc -3'
miRNA:   3'- -CGGGG--------GACaaAGa----GUGCAUGGa------GUGG- -5'
21412 3' -53 NC_004812.1 + 106509 0.66 0.972845
Target:  5'- gGCCCCCggGggUCguccaccacggccagCACGcGCCcCACCu -3'
miRNA:   3'- -CGGGGGa-CaaAGa--------------GUGCaUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 93363 0.66 0.972845
Target:  5'- cGCCUCCUcgacccccagCAUGUGCgUCACCg -3'
miRNA:   3'- -CGGGGGAcaaaga----GUGCAUGgAGUGG- -5'
21412 3' -53 NC_004812.1 + 85682 0.66 0.972569
Target:  5'- cGCCCgCCUGUaUCgCugGcgGCCagACCu -3'
miRNA:   3'- -CGGG-GGACAaAGaGugCa-UGGagUGG- -5'
21412 3' -53 NC_004812.1 + 137749 0.66 0.972569
Target:  5'- gGCUCCCgccucgUUUCGCaGUACCgcCACCg -3'
miRNA:   3'- -CGGGGGacaa--AGAGUG-CAUGGa-GUGG- -5'
21412 3' -53 NC_004812.1 + 9211 0.66 0.972569
Target:  5'- -aCCCCUG-UUC-CGCGUgaucgucgaaGCCUC-CCg -3'
miRNA:   3'- cgGGGGACaAAGaGUGCA----------UGGAGuGG- -5'
21412 3' -53 NC_004812.1 + 129656 0.67 0.970581
Target:  5'- cGCCCCCUGgggcacgacugcgggCUgGCGguggACCUCuACg -3'
miRNA:   3'- -CGGGGGACaaa------------GAgUGCa---UGGAG-UGg -5'
21412 3' -53 NC_004812.1 + 49384 0.67 0.969698
Target:  5'- cGCCgCCCUGUgcCUCgACGcccaggcgGCCcgCGCCg -3'
miRNA:   3'- -CGG-GGGACAaaGAG-UGCa-------UGGa-GUGG- -5'
21412 3' -53 NC_004812.1 + 46515 0.67 0.969698
Target:  5'- cGCCCCCcgGgggggCcCACGggGCCUCuCCg -3'
miRNA:   3'- -CGGGGGa-Caaa--GaGUGCa-UGGAGuGG- -5'
21412 3' -53 NC_004812.1 + 27077 0.67 0.966618
Target:  5'- cGCCgCCgaGUgcCUCACGgccUGCCgCGCCg -3'
miRNA:   3'- -CGG-GGgaCAaaGAGUGC---AUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 152586 0.67 0.966618
Target:  5'- cGCCgCCgaGUgcCUCACGgccUGCCgCGCCg -3'
miRNA:   3'- -CGG-GGgaCAaaGAGUGC---AUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 28695 0.67 0.966618
Target:  5'- uGCCCuuCCUGgaUUUCGCG-ACCgcCGCCc -3'
miRNA:   3'- -CGGG--GGACaaAGAGUGCaUGGa-GUGG- -5'
21412 3' -53 NC_004812.1 + 81725 0.67 0.963324
Target:  5'- gGCCCCgUGcacgaUCGCGUGCagCUCGCg -3'
miRNA:   3'- -CGGGGgACaaag-AGUGCAUG--GAGUGg -5'
21412 3' -53 NC_004812.1 + 47367 0.67 0.963324
Target:  5'- gGCCuCCCUcGg--CgUCACGUucuGCCUCACg -3'
miRNA:   3'- -CGG-GGGA-CaaaG-AGUGCA---UGGAGUGg -5'
21412 3' -53 NC_004812.1 + 136125 0.67 0.963324
Target:  5'- cUUCCCggGggUCgggCGCGUgaagaACCUCACCa -3'
miRNA:   3'- cGGGGGa-CaaAGa--GUGCA-----UGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 78064 0.67 0.962639
Target:  5'- aGCCCCCggagccccCUUGCGgcaGCCUgACCg -3'
miRNA:   3'- -CGGGGGacaaa---GAGUGCa--UGGAgUGG- -5'
21412 3' -53 NC_004812.1 + 54140 0.67 0.95981
Target:  5'- uGCuCUCCaUGUugUUCcgCACGUACUUUGCCg -3'
miRNA:   3'- -CG-GGGG-ACA--AAGa-GUGCAUGGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.