miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21412 5' -62.2 NC_004812.1 + 25456 0.66 0.647081
Target:  5'- -cGGCGGACgCgGGGAGGaaGAGaCCAu -3'
miRNA:   3'- ccCCGCCUG-GgCCCUCUagCUC-GGUu -5'
21412 5' -62.2 NC_004812.1 + 124343 0.66 0.647081
Target:  5'- gGGGGgGGACgccgcggaCCGGGAGGaCGuGuCCAu -3'
miRNA:   3'- -CCCCgCCUG--------GGCCCUCUaGCuC-GGUu -5'
21412 5' -62.2 NC_004812.1 + 145776 0.66 0.647081
Target:  5'- cGGGGgGGugCCGGaagcAGcgCGAGCg-- -3'
miRNA:   3'- -CCCCgCCugGGCCc---UCuaGCUCGguu -5'
21412 5' -62.2 NC_004812.1 + 124582 0.66 0.647081
Target:  5'- cGGGCcuGGAgccCCCGGGGGG-CG-GCCGGu -3'
miRNA:   3'- cCCCG--CCU---GGGCCCUCUaGCuCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 150964 0.66 0.647081
Target:  5'- -cGGCGGACgCgGGGAGGaaGAGaCCAu -3'
miRNA:   3'- ccCCGCCUG-GgCCCUCUagCUC-GGUu -5'
21412 5' -62.2 NC_004812.1 + 78721 0.66 0.637279
Target:  5'- cGGGGUucGCCCGgcgcgaGGAGGUCcGGGCCGc -3'
miRNA:   3'- -CCCCGccUGGGC------CCUCUAG-CUCGGUu -5'
21412 5' -62.2 NC_004812.1 + 10474 0.66 0.637279
Target:  5'- cGGGuGgGGACCgCGGGGGG--GAGUCGg -3'
miRNA:   3'- -CCC-CgCCUGG-GCCCUCUagCUCGGUu -5'
21412 5' -62.2 NC_004812.1 + 83960 0.66 0.637279
Target:  5'- uGGGGCGcGAucgucCCUGGGGGGcgUCGcGGCCc- -3'
miRNA:   3'- -CCCCGC-CU-----GGGCCCUCU--AGC-UCGGuu -5'
21412 5' -62.2 NC_004812.1 + 70601 0.66 0.637279
Target:  5'- aGGGGCGGggGCCCGaaguaGGAGcUCGgagaGGCCc- -3'
miRNA:   3'- -CCCCGCC--UGGGC-----CCUCuAGC----UCGGuu -5'
21412 5' -62.2 NC_004812.1 + 33807 0.66 0.636298
Target:  5'- uGGGUGGaccGCCCGGGGGAgcccgccccguccUCG-GUCAc -3'
miRNA:   3'- cCCCGCC---UGGGCCCUCU-------------AGCuCGGUu -5'
21412 5' -62.2 NC_004812.1 + 8171 0.66 0.636298
Target:  5'- uGGGGCcccccauGGGUCCGGGccgGGGUCcGGCCGAg -3'
miRNA:   3'- -CCCCG-------CCUGGGCCC---UCUAGcUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 2906 0.66 0.636298
Target:  5'- uGGGUGGaccGCCCGGGGGAgcccgccccguccUCG-GUCAc -3'
miRNA:   3'- cCCCGCC---UGGGCCCUCU-------------AGCuCGGUu -5'
21412 5' -62.2 NC_004812.1 + 39072 0.66 0.636298
Target:  5'- uGGGGCcccccauGGGUCCGGGccgGGGUCcGGCCGAg -3'
miRNA:   3'- -CCCCG-------CCUGGGCCC---UCUAGcUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 154199 0.66 0.627473
Target:  5'- gGGGGCGGGggggaCGGGuguagguGAgucgCGGGCCAAc -3'
miRNA:   3'- -CCCCGCCUgg---GCCCu------CUa---GCUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 57251 0.66 0.627473
Target:  5'- uGGGCGGGCgCUGGGGGGggggGGGgCGAc -3'
miRNA:   3'- cCCCGCCUG-GGCCCUCUag--CUCgGUU- -5'
21412 5' -62.2 NC_004812.1 + 83363 0.66 0.627473
Target:  5'- -uGGCGGcccGCCUGGGGG--CGGGCCGc -3'
miRNA:   3'- ccCCGCC---UGGGCCCUCuaGCUCGGUu -5'
21412 5' -62.2 NC_004812.1 + 98053 0.66 0.627473
Target:  5'- cGGGCGccGGCUCGGGGGcggccgGAGCCGGg -3'
miRNA:   3'- cCCCGC--CUGGGCCCUCuag---CUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 123298 0.66 0.627473
Target:  5'- gGGGGCGGGggggaCGGGuguagguGAgucgCGGGCCAAc -3'
miRNA:   3'- -CCCCGCCUgg---GCCCu------CUa---GCUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 44972 0.66 0.626493
Target:  5'- gGGGGCGcgcaggaGGCCCGcGGcca-CGAGCCAGg -3'
miRNA:   3'- -CCCCGC-------CUGGGC-CCucuaGCUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 122565 0.66 0.61767
Target:  5'- gGGGGCGGAg--GGGAGcgCGgcGGCCGc -3'
miRNA:   3'- -CCCCGCCUgggCCCUCuaGC--UCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.