miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21413 3' -57.6 NC_004812.1 + 74043 0.66 0.851732
Target:  5'- cUCCCACUACcugucggcGCUGGA-GGGCUUCc- -3'
miRNA:   3'- -GGGGUGGUGa-------CGACCUaCCUGGAGua -5'
21413 3' -57.6 NC_004812.1 + 119864 0.66 0.843803
Target:  5'- -aCCACCAgCUGC-GGAcGGGCCUgCAc -3'
miRNA:   3'- ggGGUGGU-GACGaCCUaCCUGGA-GUa -5'
21413 3' -57.6 NC_004812.1 + 120876 0.66 0.843803
Target:  5'- gCCCCGCaggggGCUGGGUcgGGGCCgCGUg -3'
miRNA:   3'- -GGGGUGguga-CGACCUA--CCUGGaGUA- -5'
21413 3' -57.6 NC_004812.1 + 151777 0.66 0.843803
Target:  5'- gCCCCGCaggggGCUGGGUcgGGGCCgCGUg -3'
miRNA:   3'- -GGGGUGguga-CGACCUA--CCUGGaGUA- -5'
21413 3' -57.6 NC_004812.1 + 120605 0.66 0.843803
Target:  5'- cCCgCCACCGCaGcCUGGAgc-GCCUCAUc -3'
miRNA:   3'- -GG-GGUGGUGaC-GACCUaccUGGAGUA- -5'
21413 3' -57.6 NC_004812.1 + 118838 0.66 0.843
Target:  5'- gCCCACguggaggcgcucgCGCaGCUGGugGUGGACUUCAc -3'
miRNA:   3'- gGGGUG-------------GUGaCGACC--UACCUGGAGUa -5'
21413 3' -57.6 NC_004812.1 + 124041 0.66 0.818904
Target:  5'- gCCCugCGCgugUGCUGGG-GGGCCgCGg -3'
miRNA:   3'- gGGGugGUG---ACGACCUaCCUGGaGUa -5'
21413 3' -57.6 NC_004812.1 + 68914 0.66 0.818904
Target:  5'- -gCCGCCGCUGCgggccaGGAUgGGGCCg--- -3'
miRNA:   3'- ggGGUGGUGACGa-----CCUA-CCUGGagua -5'
21413 3' -57.6 NC_004812.1 + 68140 0.67 0.810257
Target:  5'- gCCCCugCAUgccgaUGCcc-AUGGACCUCAg -3'
miRNA:   3'- -GGGGugGUG-----ACGaccUACCUGGAGUa -5'
21413 3' -57.6 NC_004812.1 + 49547 0.67 0.801451
Target:  5'- cCCCCAguuccCCuCUcGCUGGGggGGGCCUCc- -3'
miRNA:   3'- -GGGGU-----GGuGA-CGACCUa-CCUGGAGua -5'
21413 3' -57.6 NC_004812.1 + 97557 0.67 0.801451
Target:  5'- uUCCaGCCGgUGCUGcgccggcgcguGAUGGACCUCu- -3'
miRNA:   3'- -GGGgUGGUgACGAC-----------CUACCUGGAGua -5'
21413 3' -57.6 NC_004812.1 + 131276 0.67 0.792494
Target:  5'- gCCCACCGCcgGCUGG-UGGcgacGCgCUCGc -3'
miRNA:   3'- gGGGUGGUGa-CGACCuACC----UG-GAGUa -5'
21413 3' -57.6 NC_004812.1 + 127985 0.67 0.783393
Target:  5'- cCCCCAuCCGCUGCUGccucugcuucucGA-GGcCCUCGa -3'
miRNA:   3'- -GGGGU-GGUGACGAC------------CUaCCuGGAGUa -5'
21413 3' -57.6 NC_004812.1 + 17585 0.67 0.783393
Target:  5'- uCCUCGCCGCcgGCUGGGcgucggaGGACUUCc- -3'
miRNA:   3'- -GGGGUGGUGa-CGACCUa------CCUGGAGua -5'
21413 3' -57.6 NC_004812.1 + 14308 0.67 0.783393
Target:  5'- gCCCCGCCGC-GCcGGcccgGGGCCcUCGUc -3'
miRNA:   3'- -GGGGUGGUGaCGaCCua--CCUGG-AGUA- -5'
21413 3' -57.6 NC_004812.1 + 67372 0.67 0.764798
Target:  5'- uCCCCGCCgaagaccccGCUGUUGGucgccuugcGGACCUUg- -3'
miRNA:   3'- -GGGGUGG---------UGACGACCua-------CCUGGAGua -5'
21413 3' -57.6 NC_004812.1 + 127776 0.67 0.764798
Target:  5'- gUCCCGCCcccGCaGCUGGGgcgGGACCa--- -3'
miRNA:   3'- -GGGGUGG---UGaCGACCUa--CCUGGagua -5'
21413 3' -57.6 NC_004812.1 + 73013 0.67 0.762911
Target:  5'- aCCCAcuggcgcCCGCUGCUGGAgcggcuaUGcGACCUgCAc -3'
miRNA:   3'- gGGGU-------GGUGACGACCU-------AC-CUGGA-GUa -5'
21413 3' -57.6 NC_004812.1 + 95424 0.68 0.755321
Target:  5'- cCCCCGCCAUgGCcGGGUGGcgcGCCgCGg -3'
miRNA:   3'- -GGGGUGGUGaCGaCCUACC---UGGaGUa -5'
21413 3' -57.6 NC_004812.1 + 1798 0.68 0.755321
Target:  5'- gCCCCGCCGCaGCaUGGc-GGACgUCGg -3'
miRNA:   3'- -GGGGUGGUGaCG-ACCuaCCUGgAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.