miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21413 3' -57.6 NC_004812.1 + 106340 0.72 0.49525
Target:  5'- aCCCGCCGgUucgcgcccggcgaGCUccGGGUGGACCUCAc -3'
miRNA:   3'- gGGGUGGUgA-------------CGA--CCUACCUGGAGUa -5'
21413 3' -57.6 NC_004812.1 + 120876 0.66 0.843803
Target:  5'- gCCCCGCaggggGCUGGGUcgGGGCCgCGUg -3'
miRNA:   3'- -GGGGUGguga-CGACCUA--CCUGGaGUA- -5'
21413 3' -57.6 NC_004812.1 + 17585 0.67 0.783393
Target:  5'- uCCUCGCCGCcgGCUGGGcgucggaGGACUUCc- -3'
miRNA:   3'- -GGGGUGGUGa-CGACCUa------CCUGGAGua -5'
21413 3' -57.6 NC_004812.1 + 95424 0.68 0.755321
Target:  5'- cCCCCGCCAUgGCcGGGUGGcgcGCCgCGg -3'
miRNA:   3'- -GGGGUGGUGaCGaCCUACC---UGGaGUa -5'
21413 3' -57.6 NC_004812.1 + 1798 0.68 0.755321
Target:  5'- gCCCCGCCGCaGCaUGGc-GGACgUCGg -3'
miRNA:   3'- -GGGGUGGUGaCG-ACCuaCCUGgAGUa -5'
21413 3' -57.6 NC_004812.1 + 87582 0.68 0.745736
Target:  5'- gCCCGCCA-UGCUGGGccuggGGACC-CGc -3'
miRNA:   3'- gGGGUGGUgACGACCUa----CCUGGaGUa -5'
21413 3' -57.6 NC_004812.1 + 89330 0.69 0.696517
Target:  5'- cCCCCGCCGC-GUacGAUGGACC-CAc -3'
miRNA:   3'- -GGGGUGGUGaCGacCUACCUGGaGUa -5'
21413 3' -57.6 NC_004812.1 + 28832 0.69 0.645958
Target:  5'- gUCCCGCCccaGCUGCgggGGcgGGACUUUg- -3'
miRNA:   3'- -GGGGUGG---UGACGa--CCuaCCUGGAGua -5'
21413 3' -57.6 NC_004812.1 + 137217 0.7 0.635781
Target:  5'- aCCCCGCCGuccuggccCUGCUGGAcguccgcgcggUGGGCgggCUCAc -3'
miRNA:   3'- -GGGGUGGU--------GACGACCU-----------ACCUG---GAGUa -5'
21413 3' -57.6 NC_004812.1 + 94810 0.72 0.496206
Target:  5'- cCCCCGCgGCggugGCUGGA-GGugUUCGUc -3'
miRNA:   3'- -GGGGUGgUGa---CGACCUaCCugGAGUA- -5'
21413 3' -57.6 NC_004812.1 + 136729 0.69 0.686477
Target:  5'- cCCCCGCCGCcgcgccGCUGGA--GACgCUCAa -3'
miRNA:   3'- -GGGGUGGUGa-----CGACCUacCUG-GAGUa -5'
21413 3' -57.6 NC_004812.1 + 85970 0.69 0.686477
Target:  5'- aCCCCagggcGCCAgagGCUGGAgaccGGGCCUCu- -3'
miRNA:   3'- -GGGG-----UGGUga-CGACCUa---CCUGGAGua -5'
21413 3' -57.6 NC_004812.1 + 129658 0.69 0.676392
Target:  5'- cCCCCuggggcacgACUGCggGCUGGcgGUGGACCUCu- -3'
miRNA:   3'- -GGGG---------UGGUGa-CGACC--UACCUGGAGua -5'
21413 3' -57.6 NC_004812.1 + 95648 0.69 0.666272
Target:  5'- uCCCgCACCACgggGCUcGGggGGACCg--- -3'
miRNA:   3'- -GGG-GUGGUGa--CGA-CCuaCCUGGagua -5'
21413 3' -57.6 NC_004812.1 + 105083 0.69 0.656125
Target:  5'- cCCCCggcGCCGCUGCgccgggGGcgGGACCcugCGc -3'
miRNA:   3'- -GGGG---UGGUGACGa-----CCuaCCUGGa--GUa -5'
21413 3' -57.6 NC_004812.1 + 14628 0.7 0.625601
Target:  5'- uCUCCACCACcucggGCgGGAgcagGGugCUCGUg -3'
miRNA:   3'- -GGGGUGGUGa----CGaCCUa---CCugGAGUA- -5'
21413 3' -57.6 NC_004812.1 + 73451 0.71 0.574921
Target:  5'- gCCCCGUUugUGCaGGA-GGGCCUCAg -3'
miRNA:   3'- -GGGGUGGugACGaCCUaCCUGGAGUa -5'
21413 3' -57.6 NC_004812.1 + 90425 0.71 0.564879
Target:  5'- aCCCCugCAggacCUGCUGGccggGGugCUCGc -3'
miRNA:   3'- -GGGGugGU----GACGACCua--CCugGAGUa -5'
21413 3' -57.6 NC_004812.1 + 128131 0.72 0.477261
Target:  5'- uCCCCGCcCGCcGCcgGGAUGGACCgCGg -3'
miRNA:   3'- -GGGGUG-GUGaCGa-CCUACCUGGaGUa -5'
21413 3' -57.6 NC_004812.1 + 74043 0.66 0.851732
Target:  5'- cUCCCACUACcugucggcGCUGGA-GGGCUUCc- -3'
miRNA:   3'- -GGGGUGGUGa-------CGACCUaCCUGGAGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.