miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21413 5' -60.7 NC_004812.1 + 66453 0.66 0.751048
Target:  5'- cGAUGGCGUCCAgggccgccgcgUCCaggacgcggcuguugGCCGGCG-CCu -3'
miRNA:   3'- uCUACUGCGGGU-----------GGGa--------------CGGCCGCuGG- -5'
21413 5' -60.7 NC_004812.1 + 97329 0.66 0.750121
Target:  5'- cGGGUGccgcGCGCCCgcgACCCUGauCCcGCGcACCg -3'
miRNA:   3'- -UCUAC----UGCGGG---UGGGAC--GGcCGC-UGG- -5'
21413 5' -60.7 NC_004812.1 + 17435 0.66 0.750121
Target:  5'- gGGGUGGCGgCCGuCCC-GuuGGCGGu- -3'
miRNA:   3'- -UCUACUGCgGGU-GGGaCggCCGCUgg -5'
21413 5' -60.7 NC_004812.1 + 155609 0.66 0.750121
Target:  5'- uGggGGCGaCCCcggACCCccaggacccCCGGCGACCc -3'
miRNA:   3'- uCuaCUGC-GGG---UGGGac-------GGCCGCUGG- -5'
21413 5' -60.7 NC_004812.1 + 31077 0.66 0.750121
Target:  5'- cAGGUacCGCUCgcagACCCUGCgGGUGGCa -3'
miRNA:   3'- -UCUAcuGCGGG----UGGGACGgCCGCUGg -5'
21413 5' -60.7 NC_004812.1 + 81211 0.66 0.750121
Target:  5'- cGcgGGCGUggaUGCCC--CCGGCGACCg -3'
miRNA:   3'- uCuaCUGCGg--GUGGGacGGCCGCUGG- -5'
21413 5' -60.7 NC_004812.1 + 81349 0.66 0.750121
Target:  5'- ---cGGCGCgCagGCCC-GCCagGGCGGCCg -3'
miRNA:   3'- ucuaCUGCGgG--UGGGaCGG--CCGCUGG- -5'
21413 5' -60.7 NC_004812.1 + 60397 0.66 0.750121
Target:  5'- cAGGUgGGCGgCCGCCC-GC--GCGACCg -3'
miRNA:   3'- -UCUA-CUGCgGGUGGGaCGgcCGCUGG- -5'
21413 5' -60.7 NC_004812.1 + 124708 0.66 0.750121
Target:  5'- uGggGGCGaCCCcggACCCccaggacccCCGGCGACCc -3'
miRNA:   3'- uCuaCUGC-GGG---UGGGac-------GGCCGCUGG- -5'
21413 5' -60.7 NC_004812.1 + 64812 0.66 0.750121
Target:  5'- --cUGACGgCCgaggGCCUgacgGCCaugGGCGACCg -3'
miRNA:   3'- ucuACUGCgGG----UGGGa---CGG---CCGCUGG- -5'
21413 5' -60.7 NC_004812.1 + 111511 0.66 0.750121
Target:  5'- cGAcucACGCCC-CCCgcccGCCGGcCGGCUu -3'
miRNA:   3'- uCUac-UGCGGGuGGGa---CGGCC-GCUGG- -5'
21413 5' -60.7 NC_004812.1 + 58942 0.66 0.750121
Target:  5'- cGGggGcCGCCUGgCCUGCCgugaggcuGGgGGCCg -3'
miRNA:   3'- -UCuaCuGCGGGUgGGACGG--------CCgCUGG- -5'
21413 5' -60.7 NC_004812.1 + 29081 0.66 0.750121
Target:  5'- ---cGAgGCCCGCCggcGUCGGCGcCCc -3'
miRNA:   3'- ucuaCUgCGGGUGGga-CGGCCGCuGG- -5'
21413 5' -60.7 NC_004812.1 + 59607 0.66 0.750121
Target:  5'- cGGgcGGCGCUCGCgaaCCgggGgUGGCGGCCc -3'
miRNA:   3'- -UCuaCUGCGGGUG---GGa--CgGCCGCUGG- -5'
21413 5' -60.7 NC_004812.1 + 49796 0.66 0.750121
Target:  5'- gAGAacACGCaCugCCUGCCgGGCaGCCa -3'
miRNA:   3'- -UCUacUGCGgGugGGACGG-CCGcUGG- -5'
21413 5' -60.7 NC_004812.1 + 154590 0.66 0.750121
Target:  5'- ---cGAgGCCCGCCggcGUCGGCGcCCc -3'
miRNA:   3'- ucuaCUgCGGGUGGga-CGGCCGCuGG- -5'
21413 5' -60.7 NC_004812.1 + 95898 0.66 0.750121
Target:  5'- ---cGAUGCCCGCCCUcggGUCuacucgaucgaGGgGACCu -3'
miRNA:   3'- ucuaCUGCGGGUGGGA---CGG-----------CCgCUGG- -5'
21413 5' -60.7 NC_004812.1 + 38383 0.66 0.750121
Target:  5'- cGgcGGgGCCCGCCgggaGCuCGGCGACg -3'
miRNA:   3'- uCuaCUgCGGGUGGga--CG-GCCGCUGg -5'
21413 5' -60.7 NC_004812.1 + 113838 0.66 0.750121
Target:  5'- aAGAUGGacuuuuacgUGCCCgGCgCCUGCaUGGCgGGCCu -3'
miRNA:   3'- -UCUACU---------GCGGG-UG-GGACG-GCCG-CUGG- -5'
21413 5' -60.7 NC_004812.1 + 84831 0.66 0.749192
Target:  5'- cGgcGACcCCCGCCCccccgccUGUCGcaGCGACCg -3'
miRNA:   3'- uCuaCUGcGGGUGGG-------ACGGC--CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.