miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21414 3' -58.4 NC_004812.1 + 124459 0.66 0.811129
Target:  5'- gGGcGCCCCGCCgCGGCGggggcccggccgugGCGUCc-- -3'
miRNA:   3'- gUC-UGGGGCGG-GUCGCaa------------CGCAGuaa -5'
21414 3' -58.4 NC_004812.1 + 54206 0.66 0.810257
Target:  5'- gAGACgCCGCCCgcgGGCGcUUcCGUCGUg -3'
miRNA:   3'- gUCUGgGGCGGG---UCGC-AAcGCAGUAa -5'
21414 3' -58.4 NC_004812.1 + 37066 0.66 0.810257
Target:  5'- aGGAUCCCGCCguggAGCGUccCGUCAa- -3'
miRNA:   3'- gUCUGGGGCGGg---UCGCAacGCAGUaa -5'
21414 3' -58.4 NC_004812.1 + 120224 0.66 0.810257
Target:  5'- uGGGCCCgGCCCAGCcccUGCccGUCu-- -3'
miRNA:   3'- gUCUGGGgCGGGUCGca-ACG--CAGuaa -5'
21414 3' -58.4 NC_004812.1 + 139856 0.66 0.810257
Target:  5'- uCGGGCCCgCgGCCCccggGGCGcccUGCGUCGa- -3'
miRNA:   3'- -GUCUGGG-G-CGGG----UCGCa--ACGCAGUaa -5'
21414 3' -58.4 NC_004812.1 + 87115 0.66 0.809384
Target:  5'- -cGACCCCGUCCcucuggguucggcGGCGgcGCGcCAg- -3'
miRNA:   3'- guCUGGGGCGGG-------------UCGCaaCGCaGUaa -5'
21414 3' -58.4 NC_004812.1 + 152416 0.66 0.807632
Target:  5'- gCGGuCCCCGCCguucccgccggguaCGGCGccgcggGCGUCAUc -3'
miRNA:   3'- -GUCuGGGGCGG--------------GUCGCaa----CGCAGUAa -5'
21414 3' -58.4 NC_004812.1 + 127955 0.66 0.801451
Target:  5'- -cGGCCgCCaGUCCGGCGggcGCGUCGg- -3'
miRNA:   3'- guCUGG-GG-CGGGUCGCaa-CGCAGUaa -5'
21414 3' -58.4 NC_004812.1 + 59814 0.66 0.801451
Target:  5'- gCGGGuuCgCCCGCCCAGCGgccggUGCGa---- -3'
miRNA:   3'- -GUCU--G-GGGCGGGUCGCa----ACGCaguaa -5'
21414 3' -58.4 NC_004812.1 + 101209 0.66 0.801451
Target:  5'- gGGGCCCCGCggccgCCAGCaGggGCGcCGc- -3'
miRNA:   3'- gUCUGGGGCG-----GGUCG-CaaCGCaGUaa -5'
21414 3' -58.4 NC_004812.1 + 107045 0.66 0.800562
Target:  5'- cCAGGCCCUGCucguacuggauggCCAGC---GCGUCGUg -3'
miRNA:   3'- -GUCUGGGGCG-------------GGUCGcaaCGCAGUAa -5'
21414 3' -58.4 NC_004812.1 + 105819 0.66 0.792494
Target:  5'- gGGGCUCCGgCCGGCGgcgGCG-CGg- -3'
miRNA:   3'- gUCUGGGGCgGGUCGCaa-CGCaGUaa -5'
21414 3' -58.4 NC_004812.1 + 131338 0.66 0.792494
Target:  5'- --cGCCCgGCCCGGCG-UGCGgUAUUu -3'
miRNA:   3'- gucUGGGgCGGGUCGCaACGCaGUAA- -5'
21414 3' -58.4 NC_004812.1 + 78308 0.66 0.783393
Target:  5'- -cGcCCCCGcCCCGGCG-UGCGUgCGg- -3'
miRNA:   3'- guCuGGGGC-GGGUCGCaACGCA-GUaa -5'
21414 3' -58.4 NC_004812.1 + 69025 0.66 0.783393
Target:  5'- gCGGGuCCCCagGCCCAGCauggcggGCGUCGa- -3'
miRNA:   3'- -GUCU-GGGG--CGGGUCGcaa----CGCAGUaa -5'
21414 3' -58.4 NC_004812.1 + 36402 0.66 0.777868
Target:  5'- cCGGGCCCaGCCgguugcccgcgacgaCGGCGUUGCGUa--- -3'
miRNA:   3'- -GUCUGGGgCGG---------------GUCGCAACGCAguaa -5'
21414 3' -58.4 NC_004812.1 + 84016 0.66 0.774158
Target:  5'- -cGGCCCgGCCCuccuuggggggcGGCGUUgGUGUCGg- -3'
miRNA:   3'- guCUGGGgCGGG------------UCGCAA-CGCAGUaa -5'
21414 3' -58.4 NC_004812.1 + 30838 0.66 0.774158
Target:  5'- cCAGGCgCCGCCCGGgGgcGCGcCc-- -3'
miRNA:   3'- -GUCUGgGGCGGGUCgCaaCGCaGuaa -5'
21414 3' -58.4 NC_004812.1 + 110161 0.66 0.774158
Target:  5'- gAGGCCCUgGCCC-GCGgggGUGUCGa- -3'
miRNA:   3'- gUCUGGGG-CGGGuCGCaa-CGCAGUaa -5'
21414 3' -58.4 NC_004812.1 + 31089 0.66 0.770429
Target:  5'- gCAGACCCUGCggguggcauugggCGGCGggGCGUCc-- -3'
miRNA:   3'- -GUCUGGGGCGg------------GUCGCaaCGCAGuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.