miRNA display CGI


Results 1 - 20 of 739 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21414 5' -54.2 NC_004812.1 + 142456 0.66 0.960562
Target:  5'- aGAGCAC-CAuGGGGCuGggCGaGGGCGCc -3'
miRNA:   3'- gUUUGUGcGU-UUCCGuCa-GC-CCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 84427 0.66 0.960562
Target:  5'- aGAGCucGCGCGAAGGgGGUucCGGGucCGCc -3'
miRNA:   3'- gUUUG--UGCGUUUCCgUCA--GCCCc-GCG- -5'
21414 5' -54.2 NC_004812.1 + 2899 0.66 0.960562
Target:  5'- gCGAGCAgGCcGAGGUAcUCGacGGCGCc -3'
miRNA:   3'- -GUUUGUgCGuUUCCGUcAGCc-CCGCG- -5'
21414 5' -54.2 NC_004812.1 + 128407 0.66 0.960562
Target:  5'- gCGAGCAgGCcGAGGUAcUCGacGGCGCc -3'
miRNA:   3'- -GUUUGUgCGuUUCCGUcAGCc-CCGCG- -5'
21414 5' -54.2 NC_004812.1 + 121771 0.66 0.960562
Target:  5'- -cGGgAgGCGGGGGCAG-CGaGGGcCGCu -3'
miRNA:   3'- guUUgUgCGUUUCCGUCaGC-CCC-GCG- -5'
21414 5' -54.2 NC_004812.1 + 25339 0.66 0.960562
Target:  5'- gCGGACGgGgAGAGGagaGGggcCGGaGGCGCg -3'
miRNA:   3'- -GUUUGUgCgUUUCCg--UCa--GCC-CCGCG- -5'
21414 5' -54.2 NC_004812.1 + 150847 0.66 0.960562
Target:  5'- gCGGACGgGgAGAGGagaGGggcCGGaGGCGCg -3'
miRNA:   3'- -GUUUGUgCgUUUCCg--UCa--GCC-CCGCG- -5'
21414 5' -54.2 NC_004812.1 + 74583 0.66 0.960562
Target:  5'- gAGGCGgGCcagcAGGCcGUCGuGGCGCu -3'
miRNA:   3'- gUUUGUgCGuu--UCCGuCAGCcCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 128132 0.66 0.960562
Target:  5'- -uGGCGcCGCGGcccAGGCGcggCGGcGGCGCg -3'
miRNA:   3'- guUUGU-GCGUU---UCCGUca-GCC-CCGCG- -5'
21414 5' -54.2 NC_004812.1 + 19153 0.66 0.960562
Target:  5'- ---cCGCGgGGGGcGCGG-CGGcGGCGCc -3'
miRNA:   3'- guuuGUGCgUUUC-CGUCaGCC-CCGCG- -5'
21414 5' -54.2 NC_004812.1 + 56189 0.66 0.960562
Target:  5'- gCGGACGUGC--GGGCGGccUCGcGGCGCa -3'
miRNA:   3'- -GUUUGUGCGuuUCCGUC--AGCcCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 136428 0.66 0.960562
Target:  5'- aAGACGCGCccgcucGCccgGGUCGGGGCccgaGCg -3'
miRNA:   3'- gUUUGUGCGuuuc--CG---UCAGCCCCG----CG- -5'
21414 5' -54.2 NC_004812.1 + 2624 0.66 0.960562
Target:  5'- -uGGCGcCGCGGcccAGGCGcggCGGcGGCGCg -3'
miRNA:   3'- guUUGU-GCGUU---UCCGUca-GCC-CCGCG- -5'
21414 5' -54.2 NC_004812.1 + 121501 0.66 0.960562
Target:  5'- -uAGCGCGUGGggccGGGCGccgCgGGGGCGCc -3'
miRNA:   3'- guUUGUGCGUU----UCCGUca-G-CCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 81920 0.66 0.960562
Target:  5'- gCGAACGCgaucgaGCGGGGGaGGUaGGcGGCGCg -3'
miRNA:   3'- -GUUUGUG------CGUUUCCgUCAgCC-CCGCG- -5'
21414 5' -54.2 NC_004812.1 + 127785 0.66 0.960562
Target:  5'- --cGCGCGCAGcacgagcGGCGcggcGUCGGGGUccgGCu -3'
miRNA:   3'- guuUGUGCGUUu------CCGU----CAGCCCCG---CG- -5'
21414 5' -54.2 NC_004812.1 + 152120 0.66 0.960562
Target:  5'- uCGAcCGCGCcugcuucGAGGCc-UCGGGcGCGCg -3'
miRNA:   3'- -GUUuGUGCGu------UUCCGucAGCCC-CGCG- -5'
21414 5' -54.2 NC_004812.1 + 74953 0.66 0.960562
Target:  5'- --cGCGCGCcgcGGuCAG-CGGGuGCGCc -3'
miRNA:   3'- guuUGUGCGuuuCC-GUCaGCCC-CGCG- -5'
21414 5' -54.2 NC_004812.1 + 90499 0.66 0.960562
Target:  5'- ----gGCGgGAGGGCgcggGGagGGGGCGUc -3'
miRNA:   3'- guuugUGCgUUUCCG----UCagCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 31257 0.66 0.960562
Target:  5'- aAAGCGCGCcgGGAGGUcGUCGcccGGCGg -3'
miRNA:   3'- gUUUGUGCG--UUUCCGuCAGCc--CCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.