miRNA display CGI


Results 1 - 20 of 739 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21414 5' -54.2 NC_004812.1 + 109389 1.1 0.003434
Target:  5'- uCAAACACGCAAAGGCAGUCGGGGCGCc -3'
miRNA:   3'- -GUUUGUGCGUUUCCGUCAGCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 7629 0.9 0.071477
Target:  5'- gAGACGCGCGgcGGCcggGGUCGGGGCGCg -3'
miRNA:   3'- gUUUGUGCGUuuCCG---UCAGCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 38530 0.9 0.071477
Target:  5'- gAGACGCGCGgcGGCcggGGUCGGGGCGCg -3'
miRNA:   3'- gUUUGUGCGUuuCCG---UCAGCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 64291 0.85 0.162722
Target:  5'- gAGACGCGCGAgcGGGCGG-CGGGGCGa -3'
miRNA:   3'- gUUUGUGCGUU--UCCGUCaGCCCCGCg -5'
21414 5' -54.2 NC_004812.1 + 112240 0.82 0.231617
Target:  5'- ----gACGCGGGGGCGGaCGGGGCGUg -3'
miRNA:   3'- guuugUGCGUUUCCGUCaGCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 42236 0.81 0.255389
Target:  5'- -cGACGCGUucAGGCAGUaCGGGGcCGCg -3'
miRNA:   3'- guUUGUGCGuuUCCGUCA-GCCCC-GCG- -5'
21414 5' -54.2 NC_004812.1 + 51436 0.8 0.301748
Target:  5'- gCAGGCACGCGGccgcucGCAGgCGGGGCGCu -3'
miRNA:   3'- -GUUUGUGCGUUuc----CGUCaGCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 84330 0.8 0.301748
Target:  5'- gGAGCGCcccggGCGGGGGCAGgcggaagCGGGGUGCg -3'
miRNA:   3'- gUUUGUG-----CGUUUCCGUCa------GCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 60838 0.8 0.301748
Target:  5'- gCGGGCGCGCucgcAGAGGCgcgucaGGuUCGGGGCGCg -3'
miRNA:   3'- -GUUUGUGCG----UUUCCG------UC-AGCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 20050 0.79 0.331031
Target:  5'- -cAGCACGUGGAGGCGGUCGcGGGUccucgGCg -3'
miRNA:   3'- guUUGUGCGUUUCCGUCAGC-CCCG-----CG- -5'
21414 5' -54.2 NC_004812.1 + 11283 0.79 0.338671
Target:  5'- cCGAGCACGCccacGAGGCGcgccgcgCGGGGCGCc -3'
miRNA:   3'- -GUUUGUGCGu---UUCCGUca-----GCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 43039 0.79 0.345656
Target:  5'- gGGGCGgugggggUGCGGGGGCGGUgGGGGUGCg -3'
miRNA:   3'- gUUUGU-------GCGUUUCCGUCAgCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 43005 0.79 0.345656
Target:  5'- gGGGCGgugggggUGCGGGGGCGGUgGGGGUGCg -3'
miRNA:   3'- gUUUGU-------GCGUUUCCGUCAgCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 24514 0.79 0.354333
Target:  5'- --cGCGcCGCGGGGGCugcGGUCGGGGCuGCg -3'
miRNA:   3'- guuUGU-GCGUUUCCG---UCAGCCCCG-CG- -5'
21414 5' -54.2 NC_004812.1 + 122229 0.78 0.362353
Target:  5'- gCGGGCGCGgGGGgcucGGCGG-CGGGGCGCg -3'
miRNA:   3'- -GUUUGUGCgUUU----CCGUCaGCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 153130 0.78 0.362353
Target:  5'- gCGGGCGCGgGGGgcucGGCGG-CGGGGCGCg -3'
miRNA:   3'- -GUUUGUGCgUUU----CCGUCaGCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 156216 0.78 0.378768
Target:  5'- --uGCGCGCGuGGGgGG-CGGGGCGCc -3'
miRNA:   3'- guuUGUGCGUuUCCgUCaGCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 125315 0.78 0.378768
Target:  5'- --uGCGCGCGuGGGgGG-CGGGGCGCc -3'
miRNA:   3'- guuUGUGCGUuUCCgUCaGCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 148940 0.78 0.378768
Target:  5'- ----gGCGaCGAcGGUGGUCGGGGCGCg -3'
miRNA:   3'- guuugUGC-GUUuCCGUCAGCCCCGCG- -5'
21414 5' -54.2 NC_004812.1 + 98665 0.78 0.378768
Target:  5'- --cGCACGCGGGGGUcgAGcCGGGGCGg -3'
miRNA:   3'- guuUGUGCGUUUCCG--UCaGCCCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.