miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21415 3' -61.8 NC_004812.1 + 91990 0.66 0.683266
Target:  5'- -cGAUGGUugugACGGUGgCCgcgacgugcaGGCaGGGCa -3'
miRNA:   3'- auCUACCA----UGCCACgGGg---------CCGcCCCG- -5'
21415 3' -61.8 NC_004812.1 + 31629 0.66 0.683266
Target:  5'- ----cGGcGCGGU-CgCCGGCGGGGg -3'
miRNA:   3'- aucuaCCaUGCCAcGgGGCCGCCCCg -5'
21415 3' -61.8 NC_004812.1 + 94375 0.66 0.683266
Target:  5'- ---cUGGUu---UGCCCUGGCGGcGGCg -3'
miRNA:   3'- aucuACCAugccACGGGGCCGCC-CCG- -5'
21415 3' -61.8 NC_004812.1 + 129411 0.66 0.683266
Target:  5'- -cGcgGGcGCGGcgGCgCggCGGCGGGGCc -3'
miRNA:   3'- auCuaCCaUGCCa-CGgG--GCCGCCCCG- -5'
21415 3' -61.8 NC_004812.1 + 25779 0.66 0.683266
Target:  5'- ----cGG-GCGGcGCCCCGGCGGacgacGCg -3'
miRNA:   3'- aucuaCCaUGCCaCGGGGCCGCCc----CG- -5'
21415 3' -61.8 NC_004812.1 + 137311 0.66 0.683266
Target:  5'- --aGUGGUaccugACGGUGCacgCCgGGCcgGGGGCc -3'
miRNA:   3'- aucUACCA-----UGCCACG---GGgCCG--CCCCG- -5'
21415 3' -61.8 NC_004812.1 + 11332 0.66 0.683266
Target:  5'- -cGGUGGgcUGG-GCCgaCGGUGuGGGCu -3'
miRNA:   3'- auCUACCauGCCaCGGg-GCCGC-CCCG- -5'
21415 3' -61.8 NC_004812.1 + 3903 0.66 0.683266
Target:  5'- -cGcgGGcGCGGcgGCgCggCGGCGGGGCc -3'
miRNA:   3'- auCuaCCaUGCCa-CGgG--GCCGCCCCG- -5'
21415 3' -61.8 NC_004812.1 + 151287 0.66 0.683266
Target:  5'- ----cGG-GCGGcGCCCCGGCGGacgacGCg -3'
miRNA:   3'- aucuaCCaUGCCaCGGGGCCGCCc----CG- -5'
21415 3' -61.8 NC_004812.1 + 728 0.66 0.683266
Target:  5'- ----cGGcGCGGU-CgCCGGCGGGGg -3'
miRNA:   3'- aucuaCCaUGCCAcGgGGCCGCCCCg -5'
21415 3' -61.8 NC_004812.1 + 54533 0.66 0.683266
Target:  5'- cGGAcgcguUGGUGCccGGcGCgCCCGGCGcGGCc -3'
miRNA:   3'- aUCU-----ACCAUG--CCaCG-GGGCCGCcCCG- -5'
21415 3' -61.8 NC_004812.1 + 122755 0.66 0.677407
Target:  5'- gGGAgagGGcgcgcACGGUGCgCCCgccgagggugaccgaGGaCGGGGCg -3'
miRNA:   3'- aUCUa--CCa----UGCCACG-GGG---------------CC-GCCCCG- -5'
21415 3' -61.8 NC_004812.1 + 121545 0.66 0.674473
Target:  5'- gUGGcgGGUcuuGCGcacgcacuuccucgGCCCCugcucGGCGGGGCg -3'
miRNA:   3'- -AUCuaCCA---UGCca------------CGGGG-----CCGCCCCG- -5'
21415 3' -61.8 NC_004812.1 + 152446 0.66 0.674473
Target:  5'- gUGGcgGGUcuuGCGcacgcacuuccucgGCCCCugcucGGCGGGGCg -3'
miRNA:   3'- -AUCuaCCA---UGCca------------CGGGG-----CCGCCCCG- -5'
21415 3' -61.8 NC_004812.1 + 100664 0.66 0.673494
Target:  5'- ----cGGgcCGG-GCCUCGGCGucGGGCc -3'
miRNA:   3'- aucuaCCauGCCaCGGGGCCGC--CCCG- -5'
21415 3' -61.8 NC_004812.1 + 37806 0.66 0.673494
Target:  5'- -uGGUGGUcucggggcGCGcUGCgCCC-GCGGGGCc -3'
miRNA:   3'- auCUACCA--------UGCcACG-GGGcCGCCCCG- -5'
21415 3' -61.8 NC_004812.1 + 68159 0.66 0.673494
Target:  5'- --cAUGGaccucagGCGGUcgugGCCCCGGCGgcacugggggguGGGCu -3'
miRNA:   3'- aucUACCa------UGCCA----CGGGGCCGC------------CCCG- -5'
21415 3' -61.8 NC_004812.1 + 130659 0.66 0.673494
Target:  5'- gGGAUGGUagaucGCGGU--CUCGGC-GGGCa -3'
miRNA:   3'- aUCUACCA-----UGCCAcgGGGCCGcCCCG- -5'
21415 3' -61.8 NC_004812.1 + 50874 0.66 0.673494
Target:  5'- cAGcUGGUcGCGGgccaccCCCCGGCccgguguucGGGGCc -3'
miRNA:   3'- aUCuACCA-UGCCac----GGGGCCG---------CCCCG- -5'
21415 3' -61.8 NC_004812.1 + 6905 0.66 0.673494
Target:  5'- -uGGUGGUcucggggcGCGcUGCgCCC-GCGGGGCc -3'
miRNA:   3'- auCUACCA--------UGCcACG-GGGcCGCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.