miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21415 5' -54.8 NC_004812.1 + 80634 0.66 0.942864
Target:  5'- cGAGCUgCGCCG---CCUGCAggcGCUGGCc -3'
miRNA:   3'- -CUCGAaGUGGCucaGGGCGU---UGACUG- -5'
21415 5' -54.8 NC_004812.1 + 113116 0.66 0.942864
Target:  5'- cGGCUgacgcgCACCGAGacgCgCCGCGACcuggGGCu -3'
miRNA:   3'- cUCGAa-----GUGGCUCa--G-GGCGUUGa---CUG- -5'
21415 5' -54.8 NC_004812.1 + 23127 0.66 0.942864
Target:  5'- -uGCUgcagaUCACCG--UCCUGCuGCUGGCg -3'
miRNA:   3'- cuCGA-----AGUGGCucAGGGCGuUGACUG- -5'
21415 5' -54.8 NC_004812.1 + 52088 0.66 0.941469
Target:  5'- uAGCUccucuucgucugugUCGCCGAGgggggaguaCCGCGGCUuGGCg -3'
miRNA:   3'- cUCGA--------------AGUGGCUCag-------GGCGUUGA-CUG- -5'
21415 5' -54.8 NC_004812.1 + 95631 0.66 0.938129
Target:  5'- uGGCcgucgUCGUCGGGUCCCGCAccACggGGCu -3'
miRNA:   3'- cUCGa----AGUGGCUCAGGGCGU--UGa-CUG- -5'
21415 5' -54.8 NC_004812.1 + 69830 0.66 0.938129
Target:  5'- gGGGgUUCGCCGuccgcGUCCCaGaacuGCUGACg -3'
miRNA:   3'- -CUCgAAGUGGCu----CAGGG-Cgu--UGACUG- -5'
21415 5' -54.8 NC_004812.1 + 73526 0.66 0.938129
Target:  5'- aGGCcggUgGCCGGGggcgggCCCGCAGC-GACc -3'
miRNA:   3'- cUCGa--AgUGGCUCa-----GGGCGUUGaCUG- -5'
21415 5' -54.8 NC_004812.1 + 30090 0.66 0.938129
Target:  5'- aGGGCgUUCACCGAGUCggCGUggGGCUG-Cg -3'
miRNA:   3'- -CUCG-AAGUGGCUCAGg-GCG--UUGACuG- -5'
21415 5' -54.8 NC_004812.1 + 76095 0.66 0.933149
Target:  5'- cGAGCUUCuCCGccAGgUCCGCGGC-GGCg -3'
miRNA:   3'- -CUCGAAGuGGC--UCaGGGCGUUGaCUG- -5'
21415 5' -54.8 NC_004812.1 + 130913 0.66 0.933149
Target:  5'- gGGGCgUCGCCG-GcCCCGCGGacGACg -3'
miRNA:   3'- -CUCGaAGUGGCuCaGGGCGUUgaCUG- -5'
21415 5' -54.8 NC_004812.1 + 5405 0.66 0.933149
Target:  5'- gGGGCgUCGCCG-GcCCCGCGGacGACg -3'
miRNA:   3'- -CUCGaAGUGGCuCaGGGCGUUgaCUG- -5'
21415 5' -54.8 NC_004812.1 + 124897 0.66 0.931089
Target:  5'- cGAGC-UCGCCGAGgcccugacggaggCCUGCGccgGCgagGACg -3'
miRNA:   3'- -CUCGaAGUGGCUCa------------GGGCGU---UGa--CUG- -5'
21415 5' -54.8 NC_004812.1 + 29087 0.66 0.927924
Target:  5'- cGAGCcUCGCCGAGgacgccggcCCCGCGAa-GAa -3'
miRNA:   3'- -CUCGaAGUGGCUCa--------GGGCGUUgaCUg -5'
21415 5' -54.8 NC_004812.1 + 139713 0.66 0.927924
Target:  5'- cGAGCUgccccgGCCGAGaauccuccaCCCGCGACgGGCc -3'
miRNA:   3'- -CUCGAag----UGGCUCa--------GGGCGUUGaCUG- -5'
21415 5' -54.8 NC_004812.1 + 92513 0.66 0.927924
Target:  5'- cGGCUUC-CgGGGUCCgGCGAC-GAUu -3'
miRNA:   3'- cUCGAAGuGgCUCAGGgCGUUGaCUG- -5'
21415 5' -54.8 NC_004812.1 + 37683 0.66 0.927924
Target:  5'- cAGCagCGCCGcGUCCCGCAucaggugguugaGCUcGGCc -3'
miRNA:   3'- cUCGaaGUGGCuCAGGGCGU------------UGA-CUG- -5'
21415 5' -54.8 NC_004812.1 + 7702 0.66 0.927924
Target:  5'- gGGGUcgCGCCGAGUC-CGCGGCgGGg -3'
miRNA:   3'- -CUCGaaGUGGCUCAGgGCGUUGaCUg -5'
21415 5' -54.8 NC_004812.1 + 38603 0.66 0.927924
Target:  5'- gGGGUcgCGCCGAGUC-CGCGGCgGGg -3'
miRNA:   3'- -CUCGaaGUGGCUCAGgGCGUUGaCUg -5'
21415 5' -54.8 NC_004812.1 + 88547 0.66 0.922454
Target:  5'- gGAGCUgaaccgccacaUCGCCGAGgugaUGCuGCUGGCg -3'
miRNA:   3'- -CUCGA-----------AGUGGCUCagg-GCGuUGACUG- -5'
21415 5' -54.8 NC_004812.1 + 107648 0.66 0.916737
Target:  5'- gGGGCacgUCGCCGGGggcggCCgGCAGCacgccgUGGCg -3'
miRNA:   3'- -CUCGa--AGUGGCUCa----GGgCGUUG------ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.