miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21416 3' -56.2 NC_004812.1 + 152918 0.66 0.932353
Target:  5'- ---cGCCGGgcgGGACUuggGCGCCGGgCGGGa -3'
miRNA:   3'- ugcaUGGCU---UCUGG---UGCGGCCaGCUC- -5'
21416 3' -56.2 NC_004812.1 + 142407 0.66 0.932353
Target:  5'- gGCGggGCCGAGGACg--GCCGGaaCGAGu -3'
miRNA:   3'- -UGCa-UGGCUUCUGgugCGGCCa-GCUC- -5'
21416 3' -56.2 NC_004812.1 + 127518 0.66 0.932353
Target:  5'- gGCGgucGCuCGggGcGCCgACGCCGG-CGGGc -3'
miRNA:   3'- -UGCa--UG-GCuuC-UGG-UGCGGCCaGCUC- -5'
21416 3' -56.2 NC_004812.1 + 152877 0.66 0.932353
Target:  5'- gGCGgGCCuGGgcuGGGCCugaGCGCCGGgCGGGa -3'
miRNA:   3'- -UGCaUGG-CU---UCUGG---UGCGGCCaGCUC- -5'
21416 3' -56.2 NC_004812.1 + 91409 0.66 0.932353
Target:  5'- cCGUGagcaCGAAGucGCgCACGucCCGGUCGGGg -3'
miRNA:   3'- uGCAUg---GCUUC--UG-GUGC--GGCCAGCUC- -5'
21416 3' -56.2 NC_004812.1 + 122017 0.66 0.932353
Target:  5'- ---cGCCGGgcgGGACUuggGCGCCGGgCGGGa -3'
miRNA:   3'- ugcaUGGCU---UCUGG---UGCGGCCaGCUC- -5'
21416 3' -56.2 NC_004812.1 + 2009 0.66 0.932353
Target:  5'- gGCGgucGCuCGggGcGCCgACGCCGG-CGGGc -3'
miRNA:   3'- -UGCa--UG-GCuuC-UGG-UGCGGCCaGCUC- -5'
21416 3' -56.2 NC_004812.1 + 151523 0.66 0.932353
Target:  5'- gACGaUGCCGAcgcGGACgGCGaCGG-CGGGg -3'
miRNA:   3'- -UGC-AUGGCU---UCUGgUGCgGCCaGCUC- -5'
21416 3' -56.2 NC_004812.1 + 21064 0.66 0.932353
Target:  5'- cUGUgGCCGggGuccgaguCCGCGgCGGcCGAGg -3'
miRNA:   3'- uGCA-UGGCuuCu------GGUGCgGCCaGCUC- -5'
21416 3' -56.2 NC_004812.1 + 121976 0.66 0.932353
Target:  5'- gGCGgGCCuGGgcuGGGCCugaGCGCCGGgCGGGa -3'
miRNA:   3'- -UGCaUGG-CU---UCUGG---UGCGGCCaGCUC- -5'
21416 3' -56.2 NC_004812.1 + 26014 0.66 0.932353
Target:  5'- gACGaUGCCGAcgcGGACgGCGaCGG-CGGGg -3'
miRNA:   3'- -UGC-AUGGCU---UCUGgUGCgGCCaGCUC- -5'
21416 3' -56.2 NC_004812.1 + 77431 0.66 0.927248
Target:  5'- cCGUccaGCCucGAAGACCugucCGCCGGcCGAc -3'
miRNA:   3'- uGCA---UGG--CUUCUGGu---GCGGCCaGCUc -5'
21416 3' -56.2 NC_004812.1 + 67585 0.66 0.927248
Target:  5'- uCGUACuCGAAGGCCGucuugaauCGCCGaagCGGGu -3'
miRNA:   3'- uGCAUG-GCUUCUGGU--------GCGGCca-GCUC- -5'
21416 3' -56.2 NC_004812.1 + 129014 0.66 0.927248
Target:  5'- gGCGgguCCGggGGCUACGgCgaGGUgGAGc -3'
miRNA:   3'- -UGCau-GGCuuCUGGUGCgG--CCAgCUC- -5'
21416 3' -56.2 NC_004812.1 + 156024 0.66 0.927248
Target:  5'- cGCGcUACCGGAG-CCGCGCCcG-CGGc -3'
miRNA:   3'- -UGC-AUGGCUUCuGGUGCGGcCaGCUc -5'
21416 3' -56.2 NC_004812.1 + 68941 0.66 0.927248
Target:  5'- gACGUuCUGGGugauGGCCGCGagGGUCGAGu -3'
miRNA:   3'- -UGCAuGGCUU----CUGGUGCggCCAGCUC- -5'
21416 3' -56.2 NC_004812.1 + 124624 0.66 0.927248
Target:  5'- cCGUGgCGGAccuGCCGCgGCCGGggggCGAGa -3'
miRNA:   3'- uGCAUgGCUUc--UGGUG-CGGCCa---GCUC- -5'
21416 3' -56.2 NC_004812.1 + 48953 0.66 0.927248
Target:  5'- gGCGUGCUGccGGCCGCccCCGG-CGAc -3'
miRNA:   3'- -UGCAUGGCuuCUGGUGc-GGCCaGCUc -5'
21416 3' -56.2 NC_004812.1 + 114220 0.66 0.927248
Target:  5'- cACGaUGCCcacaaaacGCCgGCGCCGGUCGGGc -3'
miRNA:   3'- -UGC-AUGGcuuc----UGG-UGCGGCCAGCUC- -5'
21416 3' -56.2 NC_004812.1 + 125123 0.66 0.927248
Target:  5'- cGCGcUACCGGAG-CCGCGCCcG-CGGc -3'
miRNA:   3'- -UGC-AUGGCUUCuGGUGCGGcCaGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.