miRNA display CGI


Results 1 - 20 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21416 5' -59 NC_004812.1 + 74766 0.66 0.817966
Target:  5'- gCGCGCGGCCccgagggccuccGGCG-ACuuCCAcgCGCc -3'
miRNA:   3'- -GCGCGCCGG------------CCGCaUGu-GGUaaGCGu -5'
21416 5' -59 NC_004812.1 + 77052 0.66 0.817966
Target:  5'- gCGCGCGGCgaGGCGcucgcGCGCCucggGCGa -3'
miRNA:   3'- -GCGCGCCGg-CCGCa----UGUGGuaagCGU- -5'
21416 5' -59 NC_004812.1 + 151547 0.66 0.817966
Target:  5'- gGCGgGGCCggggccgggGGCGcgGCGCCc-UCGCGc -3'
miRNA:   3'- gCGCgCCGG---------CCGCa-UGUGGuaAGCGU- -5'
21416 5' -59 NC_004812.1 + 104995 0.66 0.817966
Target:  5'- cCGCG-GGCCGccGCG-GCGCCccUCGCGc -3'
miRNA:   3'- -GCGCgCCGGC--CGCaUGUGGuaAGCGU- -5'
21416 5' -59 NC_004812.1 + 99350 0.66 0.817966
Target:  5'- aGCGC-GCCGGaGUAgGCCAggaucUCGCc -3'
miRNA:   3'- gCGCGcCGGCCgCAUgUGGUa----AGCGu -5'
21416 5' -59 NC_004812.1 + 23683 0.66 0.817966
Target:  5'- gGUGaUGGCCGGgGUccGCugCGUgCGCGc -3'
miRNA:   3'- gCGC-GCCGGCCgCA--UGugGUAaGCGU- -5'
21416 5' -59 NC_004812.1 + 103504 0.66 0.817966
Target:  5'- cCGCGaCGGCCGcGCGgaGCAUCuccUGCAg -3'
miRNA:   3'- -GCGC-GCCGGC-CGCa-UGUGGuaaGCGU- -5'
21416 5' -59 NC_004812.1 + 26038 0.66 0.817965
Target:  5'- gGCGgGGCCggggccgggGGCGcgGCGCCc-UCGCGc -3'
miRNA:   3'- gCGCgCCGG---------CCGCa-UGUGGuaAGCGU- -5'
21416 5' -59 NC_004812.1 + 118162 0.66 0.817965
Target:  5'- aCGCgGCGGUCGGCGgccuuaACCAggaGCc -3'
miRNA:   3'- -GCG-CGCCGGCCGCaug---UGGUaagCGu -5'
21416 5' -59 NC_004812.1 + 141078 0.66 0.817965
Target:  5'- gCGCuGCGcGCCGGCGggguCACgCAcgCGCc -3'
miRNA:   3'- -GCG-CGC-CGGCCGCau--GUG-GUaaGCGu -5'
21416 5' -59 NC_004812.1 + 84916 0.66 0.817965
Target:  5'- uGCGgGGCgGGCaucUGCGCCAccCGCc -3'
miRNA:   3'- gCGCgCCGgCCGc--AUGUGGUaaGCGu -5'
21416 5' -59 NC_004812.1 + 146843 0.66 0.817965
Target:  5'- cCGCGCGGCCgccGGCGcGCcgcggGCCuggUgGCGg -3'
miRNA:   3'- -GCGCGCCGG---CCGCaUG-----UGGua-AgCGU- -5'
21416 5' -59 NC_004812.1 + 66755 0.66 0.815434
Target:  5'- gCGCGcCGGCCucgcgcacgaauguGGCGaGCGCCGUgggUCGgGg -3'
miRNA:   3'- -GCGC-GCCGG--------------CCGCaUGUGGUA---AGCgU- -5'
21416 5' -59 NC_004812.1 + 112001 0.66 0.809471
Target:  5'- aGCGCggggGGCUGGCGgggauCugCggUCGCu -3'
miRNA:   3'- gCGCG----CCGGCCGCau---GugGuaAGCGu -5'
21416 5' -59 NC_004812.1 + 112747 0.66 0.809471
Target:  5'- cCGCGCGG-CGGCGc-CGCCg--CGCc -3'
miRNA:   3'- -GCGCGCCgGCCGCauGUGGuaaGCGu -5'
21416 5' -59 NC_004812.1 + 21392 0.66 0.809471
Target:  5'- gCGcCGCGGCCGucucgcCGcGCGCCGacgcgUCGCAg -3'
miRNA:   3'- -GC-GCGCCGGCc-----GCaUGUGGUa----AGCGU- -5'
21416 5' -59 NC_004812.1 + 67486 0.66 0.809471
Target:  5'- cCGCG-GGCUGGCGcccGCggGCCGUcgucUCGCGc -3'
miRNA:   3'- -GCGCgCCGGCCGCa--UG--UGGUA----AGCGU- -5'
21416 5' -59 NC_004812.1 + 121745 0.66 0.809471
Target:  5'- gCGCGCGGCgGGgG-GCGCCGg--GCc -3'
miRNA:   3'- -GCGCGCCGgCCgCaUGUGGUaagCGu -5'
21416 5' -59 NC_004812.1 + 73891 0.66 0.809471
Target:  5'- aGCucgGCGGCC-GCGgcCGCCGagUCGCGc -3'
miRNA:   3'- gCG---CGCCGGcCGCauGUGGUa-AGCGU- -5'
21416 5' -59 NC_004812.1 + 48826 0.66 0.809471
Target:  5'- aGgGCGGCCGGCcccaGUAcCGCUAc-CGCGa -3'
miRNA:   3'- gCgCGCCGGCCG----CAU-GUGGUaaGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.