miRNA display CGI


Results 1 - 20 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21416 5' -59 NC_004812.1 + 68215 0.71 0.491917
Target:  5'- gCGCGCGGCCGGCcggggGUGCGCgGgg-GCc -3'
miRNA:   3'- -GCGCGCCGGCCG-----CAUGUGgUaagCGu -5'
21416 5' -59 NC_004812.1 + 36206 0.72 0.437504
Target:  5'- aGCGCGGCC-GCGU-CGCCc-UCGCGg -3'
miRNA:   3'- gCGCGCCGGcCGCAuGUGGuaAGCGU- -5'
21416 5' -59 NC_004812.1 + 127750 0.72 0.447225
Target:  5'- aCGCGCGGCgCGGCGgcgggguccgcgucgGCGuCCGcgCGCAg -3'
miRNA:   3'- -GCGCGCCG-GCCGCa--------------UGU-GGUaaGCGU- -5'
21416 5' -59 NC_004812.1 + 44354 0.72 0.464295
Target:  5'- gCGCGCGGgCaaagGGCGUGC-CCGgggCGCAg -3'
miRNA:   3'- -GCGCGCCgG----CCGCAUGuGGUaa-GCGU- -5'
21416 5' -59 NC_004812.1 + 121050 0.72 0.464295
Target:  5'- gCGCGaCGGCCGGCGaGCcCCuccccgCGCGg -3'
miRNA:   3'- -GCGC-GCCGGCCGCaUGuGGuaa---GCGU- -5'
21416 5' -59 NC_004812.1 + 144245 0.72 0.464295
Target:  5'- cCGCGCGGCCGG-GcGCGCCcccCGCc -3'
miRNA:   3'- -GCGCGCCGGCCgCaUGUGGuaaGCGu -5'
21416 5' -59 NC_004812.1 + 568 0.72 0.482623
Target:  5'- gCGCGCGGCC-GCGUGgaGCCGcgggCGCGg -3'
miRNA:   3'- -GCGCGCCGGcCGCAUg-UGGUaa--GCGU- -5'
21416 5' -59 NC_004812.1 + 40894 0.72 0.482623
Target:  5'- aCGCcCGGCCGGCGaACACgAgggggagCGCAa -3'
miRNA:   3'- -GCGcGCCGGCCGCaUGUGgUaa-----GCGU- -5'
21416 5' -59 NC_004812.1 + 62370 0.71 0.491917
Target:  5'- uGCGC-GUCGGCGUGCACgAcggUCGCc -3'
miRNA:   3'- gCGCGcCGGCCGCAUGUGgUa--AGCGu -5'
21416 5' -59 NC_004812.1 + 142257 0.73 0.428772
Target:  5'- cCGCGCGGCCGGCaaGCACg---UGCGg -3'
miRNA:   3'- -GCGCGCCGGCCGcaUGUGguaaGCGU- -5'
21416 5' -59 NC_004812.1 + 15218 0.73 0.420144
Target:  5'- gCGCGCGGCCuGGCcgACugC-UUCGCGc -3'
miRNA:   3'- -GCGCGCCGG-CCGcaUGugGuAAGCGU- -5'
21416 5' -59 NC_004812.1 + 151209 0.74 0.378631
Target:  5'- cCGCGgGGCCGGCG-ACGCCcccggcccCGCGc -3'
miRNA:   3'- -GCGCgCCGGCCGCaUGUGGuaa-----GCGU- -5'
21416 5' -59 NC_004812.1 + 57 0.76 0.28422
Target:  5'- gGCGCGG-CGGCGcgGCGCCAcgCGCGc -3'
miRNA:   3'- gCGCGCCgGCCGCa-UGUGGUaaGCGU- -5'
21416 5' -59 NC_004812.1 + 156467 0.76 0.28422
Target:  5'- gGCGCGG-CGGCGcgGCGCCAcgCGCGc -3'
miRNA:   3'- gCGCGCCgGCCGCa-UGUGGUaaGCGU- -5'
21416 5' -59 NC_004812.1 + 112934 0.75 0.297445
Target:  5'- aGCGCGGCCcGCGcaGCGCCGUgUCGCu -3'
miRNA:   3'- gCGCGCCGGcCGCa-UGUGGUA-AGCGu -5'
21416 5' -59 NC_004812.1 + 138722 0.75 0.310447
Target:  5'- gGCGCGGCgggcccgCGGCGUGCcgGCCggUCGCc -3'
miRNA:   3'- gCGCGCCG-------GCCGCAUG--UGGuaAGCGu -5'
21416 5' -59 NC_004812.1 + 127009 0.75 0.311143
Target:  5'- aGCGcCGGCCGGCccGCGCCGccgCGCGa -3'
miRNA:   3'- gCGC-GCCGGCCGcaUGUGGUaa-GCGU- -5'
21416 5' -59 NC_004812.1 + 66306 0.75 0.311143
Target:  5'- -uCGCGGCUGGCGgcgcccagGCGCCcgUCGCc -3'
miRNA:   3'- gcGCGCCGGCCGCa-------UGUGGuaAGCGu -5'
21416 5' -59 NC_004812.1 + 130867 0.74 0.339961
Target:  5'- gGCGCGG-CGGCGUcgaugacccACACCGagUCGCGg -3'
miRNA:   3'- gCGCGCCgGCCGCA---------UGUGGUa-AGCGU- -5'
21416 5' -59 NC_004812.1 + 15972 0.74 0.362814
Target:  5'- aCGCcccGCGGCCGGCG-GCGCCGacccCGCGg -3'
miRNA:   3'- -GCG---CGCCGGCCGCaUGUGGUaa--GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.