miRNA display CGI


Results 1 - 20 of 497 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21417 3' -56.2 NC_004812.1 + 62003 0.66 0.905596
Target:  5'- cCGGCcGguGCG-CGGgACAGGcCGCGg -3'
miRNA:   3'- uGCUGaCguCGCuGUCgUGUUC-GCGC- -5'
21417 3' -56.2 NC_004812.1 + 75482 0.66 0.905596
Target:  5'- cGCGGCcGCGGCcagguccaGCGGCACGccccccAGCGCc -3'
miRNA:   3'- -UGCUGaCGUCGc-------UGUCGUGU------UCGCGc -5'
21417 3' -56.2 NC_004812.1 + 44943 0.66 0.905596
Target:  5'- gACGACggGgAGCGGUA-CACGAGCGCc -3'
miRNA:   3'- -UGCUGa-CgUCGCUGUcGUGUUCGCGc -5'
21417 3' -56.2 NC_004812.1 + 128775 0.66 0.905596
Target:  5'- -gGGCcGCAGCGcGCGGCgaGCGaggccAGCGCGc -3'
miRNA:   3'- ugCUGaCGUCGC-UGUCG--UGU-----UCGCGC- -5'
21417 3' -56.2 NC_004812.1 + 38575 0.66 0.905596
Target:  5'- -gGGCcgGgAGCGGgGGUggGCGGGCGCGg -3'
miRNA:   3'- ugCUGa-CgUCGCUgUCG--UGUUCGCGC- -5'
21417 3' -56.2 NC_004812.1 + 12074 0.66 0.905596
Target:  5'- -aGACUGUAcGCGAUgguuGCGgGAGaCGCGg -3'
miRNA:   3'- ugCUGACGU-CGCUGu---CGUgUUC-GCGC- -5'
21417 3' -56.2 NC_004812.1 + 53126 0.66 0.905596
Target:  5'- cGCGGa-GCGGUacuaccgcgaGACGGCGCGccuGGCGCGc -3'
miRNA:   3'- -UGCUgaCGUCG----------CUGUCGUGU---UCGCGC- -5'
21417 3' -56.2 NC_004812.1 + 7674 0.66 0.905596
Target:  5'- -gGGCcgGgAGCGGgGGUggGCGGGCGCGg -3'
miRNA:   3'- ugCUGa-CgUCGCUgUCG--UGUUCGCGC- -5'
21417 3' -56.2 NC_004812.1 + 143503 0.66 0.905596
Target:  5'- -gGAC-GCGGCGAgGcgggcccgggcGUACGAGCGCa -3'
miRNA:   3'- ugCUGaCGUCGCUgU-----------CGUGUUCGCGc -5'
21417 3' -56.2 NC_004812.1 + 103240 0.66 0.905596
Target:  5'- cGCGAgCaGgAGCGGCGGC-CGGGCGaCGc -3'
miRNA:   3'- -UGCU-GaCgUCGCUGUCGuGUUCGC-GC- -5'
21417 3' -56.2 NC_004812.1 + 3267 0.66 0.905596
Target:  5'- -gGGCcGCAGCGcGCGGCgaGCGaggccAGCGCGc -3'
miRNA:   3'- ugCUGaCGUCGC-UGUCG--UGU-----UCGCGC- -5'
21417 3' -56.2 NC_004812.1 + 37221 0.66 0.905596
Target:  5'- cACGACgacGCGGCcguuguGCAGCAUggcguuGAGCGUGu -3'
miRNA:   3'- -UGCUGa--CGUCGc-----UGUCGUG------UUCGCGC- -5'
21417 3' -56.2 NC_004812.1 + 84104 0.66 0.903717
Target:  5'- -gGACccCGGCGGCGGCGCGccccccgaccccgaGGCGCc -3'
miRNA:   3'- ugCUGacGUCGCUGUCGUGU--------------UCGCGc -5'
21417 3' -56.2 NC_004812.1 + 43384 0.66 0.903717
Target:  5'- cGCGGCcGC-GCGcuccgagauggaccGCAGCGCG-GCGCGc -3'
miRNA:   3'- -UGCUGaCGuCGC--------------UGUCGUGUuCGCGC- -5'
21417 3' -56.2 NC_004812.1 + 62376 0.66 0.89925
Target:  5'- uCGGCgUGCA-CGACGGuCGCcugAAGCGCGc -3'
miRNA:   3'- uGCUG-ACGUcGCUGUC-GUG---UUCGCGC- -5'
21417 3' -56.2 NC_004812.1 + 88299 0.66 0.89925
Target:  5'- gGCGcuCUGCGGCGAgCuGCugGuGGCGUGu -3'
miRNA:   3'- -UGCu-GACGUCGCU-GuCGugU-UCGCGC- -5'
21417 3' -56.2 NC_004812.1 + 16697 0.66 0.89925
Target:  5'- cCGAC--CGGCGGguGCGCGAGCGa- -3'
miRNA:   3'- uGCUGacGUCGCUguCGUGUUCGCgc -5'
21417 3' -56.2 NC_004812.1 + 75765 0.66 0.89925
Target:  5'- uACGuCU-CGGCGGCGGCGcCGAaCGCGg -3'
miRNA:   3'- -UGCuGAcGUCGCUGUCGU-GUUcGCGC- -5'
21417 3' -56.2 NC_004812.1 + 26503 0.66 0.89925
Target:  5'- gGCGACgcgGC-GCGGCAGUACGcccucaucacGCGCc -3'
miRNA:   3'- -UGCUGa--CGuCGCUGUCGUGUu---------CGCGc -5'
21417 3' -56.2 NC_004812.1 + 30179 0.66 0.89925
Target:  5'- cGCGGCggGCu-CGGCGcGCGCGAGgGCGu -3'
miRNA:   3'- -UGCUGa-CGucGCUGU-CGUGUUCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.