miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21417 5' -57.2 NC_004812.1 + 136424 0.66 0.870607
Target:  5'- cUCGAagacGCGCCCGcUCGCccGGGUCg -3'
miRNA:   3'- aAGCUgua-CGCGGGC-AGCGccUUCAG- -5'
21417 5' -57.2 NC_004812.1 + 82823 0.66 0.870607
Target:  5'- -cCGGCGccCGCCCGcUCGCGGAGc-- -3'
miRNA:   3'- aaGCUGUacGCGGGC-AGCGCCUUcag -5'
21417 5' -57.2 NC_004812.1 + 107435 0.66 0.870607
Target:  5'- -cCGGCcgcgcgGCGgCCGUCGCGGAc--- -3'
miRNA:   3'- aaGCUGua----CGCgGGCAGCGCCUucag -5'
21417 5' -57.2 NC_004812.1 + 32063 0.66 0.869872
Target:  5'- cUCGGCGUcgucgcgGgGCCCGUgGggcccggcccCGGAGGUCg -3'
miRNA:   3'- aAGCUGUA-------CgCGGGCAgC----------GCCUUCAG- -5'
21417 5' -57.2 NC_004812.1 + 31615 0.66 0.863163
Target:  5'- gUCGGCGUcgGCGCCgG-CGCGGucGcCg -3'
miRNA:   3'- aAGCUGUA--CGCGGgCaGCGCCuuCaG- -5'
21417 5' -57.2 NC_004812.1 + 714 0.66 0.863163
Target:  5'- gUCGGCGUcgGCGCCgG-CGCGGucGcCg -3'
miRNA:   3'- aAGCUGUA--CGCGGgCaGCGCCuuCaG- -5'
21417 5' -57.2 NC_004812.1 + 106730 0.66 0.863163
Target:  5'- gUCGGCGgcgGgGCCCaUCGUccgggcgcggGGggGUCg -3'
miRNA:   3'- aAGCUGUa--CgCGGGcAGCG----------CCuuCAG- -5'
21417 5' -57.2 NC_004812.1 + 103735 0.66 0.855513
Target:  5'- -aCGGCGcGCuCCCGUgggCGCGGAuGUCu -3'
miRNA:   3'- aaGCUGUaCGcGGGCA---GCGCCUuCAG- -5'
21417 5' -57.2 NC_004812.1 + 151956 0.66 0.855513
Target:  5'- -aCGGCcgGCGagccccucCCCG-CGCGGgcGUCc -3'
miRNA:   3'- aaGCUGuaCGC--------GGGCaGCGCCuuCAG- -5'
21417 5' -57.2 NC_004812.1 + 69870 0.66 0.855513
Target:  5'- gUCGGCccgGCGCUgGUCGCcGucGUCg -3'
miRNA:   3'- aAGCUGua-CGCGGgCAGCGcCuuCAG- -5'
21417 5' -57.2 NC_004812.1 + 43707 0.66 0.855513
Target:  5'- -gCGGCGaggGCGCuCCGUCGCcGucGUCu -3'
miRNA:   3'- aaGCUGUa--CGCG-GGCAGCGcCuuCAG- -5'
21417 5' -57.2 NC_004812.1 + 154164 0.66 0.855513
Target:  5'- cUCGGCcgGCGCCUaUCGgGGAugAGa- -3'
miRNA:   3'- aAGCUGuaCGCGGGcAGCgCCU--UCag -5'
21417 5' -57.2 NC_004812.1 + 123263 0.66 0.855513
Target:  5'- cUCGGCcgGCGCCUaUCGgGGAugAGa- -3'
miRNA:   3'- aAGCUGuaCGCGGGcAGCgCCU--UCag -5'
21417 5' -57.2 NC_004812.1 + 121055 0.66 0.855513
Target:  5'- -aCGGCcgGCGagccccucCCCG-CGCGGgcGUCc -3'
miRNA:   3'- aaGCUGuaCGC--------GGGCaGCGCCuuCAG- -5'
21417 5' -57.2 NC_004812.1 + 42383 0.66 0.854737
Target:  5'- -cCGACcgGCGCCgGcguuuugugggcaUCGUGGGAGg- -3'
miRNA:   3'- aaGCUGuaCGCGGgC-------------AGCGCCUUCag -5'
21417 5' -57.2 NC_004812.1 + 113448 0.66 0.847662
Target:  5'- gUgGACGUGCGuCCCGUCucuGUGGAGc-- -3'
miRNA:   3'- aAgCUGUACGC-GGGCAG---CGCCUUcag -5'
21417 5' -57.2 NC_004812.1 + 127958 0.66 0.847662
Target:  5'- -gCGA-GUGCGCCuCGccgCgGCGGAAGUCc -3'
miRNA:   3'- aaGCUgUACGCGG-GCa--G-CGCCUUCAG- -5'
21417 5' -57.2 NC_004812.1 + 12654 0.66 0.847662
Target:  5'- -cCGACAUGaGCCCGcCGCGcauGGAGcCg -3'
miRNA:   3'- aaGCUGUACgCGGGCaGCGC---CUUCaG- -5'
21417 5' -57.2 NC_004812.1 + 138388 0.66 0.847662
Target:  5'- cUUCGAgcgGCGCCuCGaCGCGGAguacuggggGGUCg -3'
miRNA:   3'- -AAGCUguaCGCGG-GCaGCGCCU---------UCAG- -5'
21417 5' -57.2 NC_004812.1 + 2450 0.66 0.847662
Target:  5'- -gCGA-GUGCGCCuCGccgCgGCGGAAGUCc -3'
miRNA:   3'- aaGCUgUACGCGG-GCa--G-CGCCUUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.