miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21418 5' -54 NC_004812.1 + 117644 0.66 0.970268
Target:  5'- gGCGCGGcGGggUCGCGggccggccgggCGCCGGg -3'
miRNA:   3'- -CGCGCCaCCa-GGUGCaauua------GCGGUC- -5'
21418 5' -54 NC_004812.1 + 148545 0.66 0.970268
Target:  5'- gGCGCGGcGGggUCGCGggccggccgggCGCCGGg -3'
miRNA:   3'- -CGCGCCaCCa-GGUGCaauua------GCGGUC- -5'
21418 5' -54 NC_004812.1 + 35554 0.66 0.969975
Target:  5'- cGCGCGGggagGGgcucgCCGgcCGUcGcgCGCCGGc -3'
miRNA:   3'- -CGCGCCa---CCa----GGU--GCAaUuaGCGGUC- -5'
21418 5' -54 NC_004812.1 + 2374 0.66 0.969975
Target:  5'- cGCGCGGcgucgcGGUCCAg------CGCCAGg -3'
miRNA:   3'- -CGCGCCa-----CCAGGUgcaauuaGCGGUC- -5'
21418 5' -54 NC_004812.1 + 139619 0.66 0.969975
Target:  5'- aGC-CGGUGGUCCggagugACGUUGA-C-CCGGa -3'
miRNA:   3'- -CGcGCCACCAGG------UGCAAUUaGcGGUC- -5'
21418 5' -54 NC_004812.1 + 133324 0.66 0.969975
Target:  5'- aUGCGGUGGUgggucggggCCACGUccAUCagGCCGu -3'
miRNA:   3'- cGCGCCACCA---------GGUGCAauUAG--CGGUc -5'
21418 5' -54 NC_004812.1 + 83050 0.66 0.969975
Target:  5'- aGCcCGGaGGUCCGCGUgcugcccgcGGUCGCUg- -3'
miRNA:   3'- -CGcGCCaCCAGGUGCAa--------UUAGCGGuc -5'
21418 5' -54 NC_004812.1 + 64161 0.66 0.969975
Target:  5'- gGCGCGGcgGGcUCCGCGcggGAgggCGgCGGg -3'
miRNA:   3'- -CGCGCCa-CC-AGGUGCaa-UUa--GCgGUC- -5'
21418 5' -54 NC_004812.1 + 60873 0.66 0.969975
Target:  5'- cGCGCGGcUGGgcUCCAgGUgccggcCGCCGu -3'
miRNA:   3'- -CGCGCC-ACC--AGGUgCAauua--GCGGUc -5'
21418 5' -54 NC_004812.1 + 4653 0.66 0.969975
Target:  5'- cGCGCGGggagGGgcucgCCGgcCGUcGcgCGCCGGc -3'
miRNA:   3'- -CGCGCCa---CCa----GGU--GCAaUuaGCGGUC- -5'
21418 5' -54 NC_004812.1 + 127882 0.66 0.969975
Target:  5'- cGCGCGGcgucgcGGUCCAg------CGCCAGg -3'
miRNA:   3'- -CGCGCCa-----CCAGGUgcaauuaGCGGUC- -5'
21418 5' -54 NC_004812.1 + 12828 0.66 0.966932
Target:  5'- cCGCGGUGGucucuggcugcUCCACGgugUAGUgGCa-- -3'
miRNA:   3'- cGCGCCACC-----------AGGUGCa--AUUAgCGguc -5'
21418 5' -54 NC_004812.1 + 149121 0.66 0.966932
Target:  5'- gGCGCcccGGUcGUCCGCGcggc-CGCCGGg -3'
miRNA:   3'- -CGCG---CCAcCAGGUGCaauuaGCGGUC- -5'
21418 5' -54 NC_004812.1 + 49223 0.66 0.966932
Target:  5'- gGgGCGGUGccGUCCGaGgcGAUCGCgCGGg -3'
miRNA:   3'- -CgCGCCAC--CAGGUgCaaUUAGCG-GUC- -5'
21418 5' -54 NC_004812.1 + 23613 0.66 0.966932
Target:  5'- gGCGCcccGGUcGUCCGCGcggc-CGCCGGg -3'
miRNA:   3'- -CGCG---CCAcCAGGUGCaauuaGCGGUC- -5'
21418 5' -54 NC_004812.1 + 100695 0.66 0.966932
Target:  5'- cGCGCGGgcguGUCgcagCGCGaccGUCGCCAGc -3'
miRNA:   3'- -CGCGCCac--CAG----GUGCaauUAGCGGUC- -5'
21418 5' -54 NC_004812.1 + 138293 0.66 0.966932
Target:  5'- cGgGCGGUGGUCgCGgCGggcucgGAggguggCGCCGGc -3'
miRNA:   3'- -CgCGCCACCAG-GU-GCaa----UUa-----GCGGUC- -5'
21418 5' -54 NC_004812.1 + 7696 0.66 0.963676
Target:  5'- gGCGCGGgGGucgcgccgagUCCGCGgcGGgggucuccgCGCCGGg -3'
miRNA:   3'- -CGCGCCaCC----------AGGUGCaaUUa--------GCGGUC- -5'
21418 5' -54 NC_004812.1 + 56187 0.66 0.963676
Target:  5'- gGCGUGGUGG-CCugGaagacGUCGUgGGc -3'
miRNA:   3'- -CGCGCCACCaGGugCaau--UAGCGgUC- -5'
21418 5' -54 NC_004812.1 + 38597 0.66 0.963676
Target:  5'- gGCGCGGgGGucgcgccgagUCCGCGgcGGgggucuccgCGCCGGg -3'
miRNA:   3'- -CGCGCCaCC----------AGGUGCaaUUa--------GCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.