miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21419 3' -57.1 NC_004812.1 + 3079 0.66 0.876628
Target:  5'- cGCGCGCGucGGUCcagGCGggcgGGGCGGGGGAg -3'
miRNA:   3'- -CGCGUGUc-CCGG---UGCa---CCUGCUCUUU- -5'
21419 3' -57.1 NC_004812.1 + 121247 0.66 0.876628
Target:  5'- cGUGgGCGGGGUCGcCGggguacucGGGCGGGGAc -3'
miRNA:   3'- -CGCgUGUCCCGGU-GCa-------CCUGCUCUUu -5'
21419 3' -57.1 NC_004812.1 + 146776 0.66 0.876628
Target:  5'- aGCGUcgucgaggcccaACgAGGGCCGCGaGGGCGgcuGGGAAu -3'
miRNA:   3'- -CGCG------------UG-UCCCGGUGCaCCUGC---UCUUU- -5'
21419 3' -57.1 NC_004812.1 + 152148 0.66 0.876628
Target:  5'- cGUGgGCGGGGUCGcCGggguacucGGGCGGGGAc -3'
miRNA:   3'- -CGCgUGUCCCGGU-GCa-------CCUGCUCUUu -5'
21419 3' -57.1 NC_004812.1 + 6809 0.66 0.876628
Target:  5'- gGCGCGCcGGGCguCugGggcugGGugGGGGGc -3'
miRNA:   3'- -CGCGUGuCCCG--GugCa----CCugCUCUUu -5'
21419 3' -57.1 NC_004812.1 + 37710 0.66 0.876628
Target:  5'- gGCGCGCcGGGCguCugGggcugGGugGGGGGc -3'
miRNA:   3'- -CGCGUGuCCCG--GugCa----CCugCUCUUu -5'
21419 3' -57.1 NC_004812.1 + 128588 0.66 0.876628
Target:  5'- cGCGCGCGucGGUCcagGCGggcgGGGCGGGGGAg -3'
miRNA:   3'- -CGCGUGUc-CCGG---UGCa---CCUGCUCUUU- -5'
21419 3' -57.1 NC_004812.1 + 47534 0.66 0.876628
Target:  5'- gGCGgGgGGGGCUGaagcacucaaaGUGGGCGAGGu- -3'
miRNA:   3'- -CGCgUgUCCCGGUg----------CACCUGCUCUuu -5'
21419 3' -57.1 NC_004812.1 + 108957 0.66 0.876628
Target:  5'- gGgGCGCGGGGgaUCGCGggacccGGugGGGAGg -3'
miRNA:   3'- -CgCGUGUCCC--GGUGCa-----CCugCUCUUu -5'
21419 3' -57.1 NC_004812.1 + 121283 0.66 0.87591
Target:  5'- cGCgGCcCGGGGCCGCcucgggcaggcgaGUGcGGCGGGAc- -3'
miRNA:   3'- -CG-CGuGUCCCGGUG-------------CAC-CUGCUCUuu -5'
21419 3' -57.1 NC_004812.1 + 122187 0.66 0.87591
Target:  5'- cCGCGCGacgccccggcgacGGGCCACGaaagaagGGGCGcGAGAc -3'
miRNA:   3'- cGCGUGU-------------CCCGGUGCa------CCUGCuCUUU- -5'
21419 3' -57.1 NC_004812.1 + 152184 0.66 0.87591
Target:  5'- cGCgGCcCGGGGCCGCcucgggcaggcgaGUGcGGCGGGAc- -3'
miRNA:   3'- -CG-CGuGUCCCGGUG-------------CAC-CUGCUCUuu -5'
21419 3' -57.1 NC_004812.1 + 69220 0.66 0.869356
Target:  5'- cGCGCccccACGGGGCCccCGgggGGGCGAu--- -3'
miRNA:   3'- -CGCG----UGUCCCGGu-GCa--CCUGCUcuuu -5'
21419 3' -57.1 NC_004812.1 + 36693 0.66 0.869356
Target:  5'- gGCGCccgccucgggcuGCGGGGCUGCG-GGGCGcGGc- -3'
miRNA:   3'- -CGCG------------UGUCCCGGUGCaCCUGCuCUuu -5'
21419 3' -57.1 NC_004812.1 + 117841 0.66 0.869356
Target:  5'- uGCGCGCGGa-CCugGUGaccaucGGCGAGAAGc -3'
miRNA:   3'- -CGCGUGUCccGGugCAC------CUGCUCUUU- -5'
21419 3' -57.1 NC_004812.1 + 5792 0.66 0.869356
Target:  5'- gGCGCccgccucgggcuGCGGGGCUGCG-GGGCGcGGc- -3'
miRNA:   3'- -CGCG------------UGUCCCGGUGCaCCUGCuCUuu -5'
21419 3' -57.1 NC_004812.1 + 138466 0.66 0.869356
Target:  5'- gGCGUuucgcgGCGGGGCCcUGcUGGACGcGGAGc -3'
miRNA:   3'- -CGCG------UGUCCCGGuGC-ACCUGCuCUUU- -5'
21419 3' -57.1 NC_004812.1 + 126946 0.66 0.869356
Target:  5'- gGgGC-CGGGGCCGCGaGGGCcGGGc- -3'
miRNA:   3'- -CgCGuGUCCCGGUGCaCCUGcUCUuu -5'
21419 3' -57.1 NC_004812.1 + 82301 0.66 0.869356
Target:  5'- gGCGuCACcGGGCCcaugACGcGGGCGAGc-- -3'
miRNA:   3'- -CGC-GUGuCCCGG----UGCaCCUGCUCuuu -5'
21419 3' -57.1 NC_004812.1 + 117388 0.66 0.869356
Target:  5'- aCGCGCGuggcccGGGCCACGcUGGugGccGAGc -3'
miRNA:   3'- cGCGUGU------CCCGGUGC-ACCugCu-CUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.