miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21419 5' -63.2 NC_004812.1 + 124474 0.65 0.642558
Target:  5'- cGGCG-C-CGCCCgggcggggaggagCCcCCGcGGCGCCGc -3'
miRNA:   3'- -CCGCaGaGCGGGa------------GGaGGU-CCGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 155375 0.65 0.642558
Target:  5'- cGGCG-C-CGCCCgggcggggaggagCCcCCGcGGCGCCGc -3'
miRNA:   3'- -CCGCaGaGCGGGa------------GGaGGU-CCGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 74376 0.66 0.636758
Target:  5'- cGGgGUCcCGCCCgcgCCcgUuuGGGCGCgGg -3'
miRNA:   3'- -CCgCAGaGCGGGa--GG--AggUCCGCGgC- -5'
21419 5' -63.2 NC_004812.1 + 3634 0.66 0.636758
Target:  5'- cGGCGcUCagGCCCagC-CCAGGC-CCGg -3'
miRNA:   3'- -CCGC-AGagCGGGagGaGGUCCGcGGC- -5'
21419 5' -63.2 NC_004812.1 + 33899 0.66 0.636758
Target:  5'- cGGcCGUCgcgaucgcCGCCCgCCUCCA--CGCCGa -3'
miRNA:   3'- -CC-GCAGa-------GCGGGaGGAGGUccGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 146949 0.66 0.636758
Target:  5'- gGGcCGUC-C-CCCUCC-CCGguGGCGCUGa -3'
miRNA:   3'- -CC-GCAGaGcGGGAGGaGGU--CCGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 117709 0.66 0.636758
Target:  5'- cGGgGUCgcgggagCGCCCcCCUgaCC-GGCGCCc -3'
miRNA:   3'- -CCgCAGa------GCGGGaGGA--GGuCCGCGGc -5'
21419 5' -63.2 NC_004812.1 + 34535 0.66 0.636758
Target:  5'- cGGCGcUCagGCCCagC-CCAGGC-CCGg -3'
miRNA:   3'- -CCGC-AGagCGGGagGaGGUCCGcGGC- -5'
21419 5' -63.2 NC_004812.1 + 148610 0.66 0.636758
Target:  5'- cGGgGUCgcgggagCGCCCcCCUgaCC-GGCGCCc -3'
miRNA:   3'- -CCgCAGa------GCGGGaGGA--GGuCCGCGGc -5'
21419 5' -63.2 NC_004812.1 + 43844 0.66 0.636758
Target:  5'- cGGC-UCgcggCGCCgaCgUCCGGGCGCgGc -3'
miRNA:   3'- -CCGcAGa---GCGGgaGgAGGUCCGCGgC- -5'
21419 5' -63.2 NC_004812.1 + 42843 0.66 0.636758
Target:  5'- uGGCG-CUuggCGCCgUCggCCAGGCGCg- -3'
miRNA:   3'- -CCGCaGA---GCGGgAGgaGGUCCGCGgc -5'
21419 5' -63.2 NC_004812.1 + 92486 0.66 0.636758
Target:  5'- cGCGUCcgCGUCCUCCcccccgucugCCGcGGCGUCu -3'
miRNA:   3'- cCGCAGa-GCGGGAGGa---------GGU-CCGCGGc -5'
21419 5' -63.2 NC_004812.1 + 78209 0.66 0.636758
Target:  5'- -cCG-CUCGCCCUUC-CCGGGCucacCCGg -3'
miRNA:   3'- ccGCaGAGCGGGAGGaGGUCCGc---GGC- -5'
21419 5' -63.2 NC_004812.1 + 15360 0.66 0.633858
Target:  5'- aGGCGUUccuuagcgaccaCGCCCUCC-CCAgggaccuGGCGaCCGu -3'
miRNA:   3'- -CCGCAGa-----------GCGGGAGGaGGU-------CCGC-GGC- -5'
21419 5' -63.2 NC_004812.1 + 105091 0.66 0.627091
Target:  5'- gGGCG-CUCGUCCUCCgacgaAGaGCcgGCCGg -3'
miRNA:   3'- -CCGCaGAGCGGGAGGagg--UC-CG--CGGC- -5'
21419 5' -63.2 NC_004812.1 + 28536 0.66 0.627091
Target:  5'- cGGCGgcagCgagCgGCCCgaCCU-CGGGCGCCGc -3'
miRNA:   3'- -CCGCa---Ga--G-CGGGa-GGAgGUCCGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 31684 0.66 0.627091
Target:  5'- gGGCGcagCUCGUCCUCg-CC-GGCGCa- -3'
miRNA:   3'- -CCGCa--GAGCGGGAGgaGGuCCGCGgc -5'
21419 5' -63.2 NC_004812.1 + 38732 0.66 0.627091
Target:  5'- gGGCGUCUCGgCggCUCuCUCgGGGCggggGUCGg -3'
miRNA:   3'- -CCGCAGAGCgG--GAG-GAGgUCCG----CGGC- -5'
21419 5' -63.2 NC_004812.1 + 85779 0.66 0.627091
Target:  5'- gGGCGUCgucccUCGCgCUCCacgaagaaCCGGaCGCCGg -3'
miRNA:   3'- -CCGCAG-----AGCGgGAGGa-------GGUCcGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 98619 0.66 0.627091
Target:  5'- gGGCGUCgguggccagCGCCgUgUUCguGGCcGCCGu -3'
miRNA:   3'- -CCGCAGa--------GCGGgAgGAGguCCG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.