miRNA display CGI


Results 1 - 20 of 270 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21419 5' -63.2 NC_004812.1 + 30379 0.71 0.318174
Target:  5'- cGGCcggGUCgggGCUCUCCUCCGGGgGCgCGg -3'
miRNA:   3'- -CCG---CAGag-CGGGAGGAGGUCCgCG-GC- -5'
21419 5' -63.2 NC_004812.1 + 55763 0.73 0.249363
Target:  5'- cGGCcccGUcCUCGCCCUCC-CC-GGCGUCGc -3'
miRNA:   3'- -CCG---CA-GAGCGGGAGGaGGuCCGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 72374 0.73 0.255074
Target:  5'- cGCGUCgucggaCGCCagCUCCUCCAGGcCGCgGa -3'
miRNA:   3'- cCGCAGa-----GCGG--GAGGAGGUCC-GCGgC- -5'
21419 5' -63.2 NC_004812.1 + 126191 0.73 0.257389
Target:  5'- cGGCG-CUCccgcgGCCCggCCUCCucggcgcggcagcccGGGCGCCGg -3'
miRNA:   3'- -CCGCaGAG-----CGGGa-GGAGG---------------UCCGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 140609 0.73 0.260893
Target:  5'- gGGCGcCggCGCCCUCCUgCAccGGUGCUGu -3'
miRNA:   3'- -CCGCaGa-GCGGGAGGAgGU--CCGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 106980 0.72 0.278997
Target:  5'- gGGCGcCUCcCCCUCCcgCCccgcGGGCGCCc -3'
miRNA:   3'- -CCGCaGAGcGGGAGGa-GG----UCCGCGGc -5'
21419 5' -63.2 NC_004812.1 + 24583 0.72 0.298087
Target:  5'- cGGCGUCcgaGUCCagCUCCAcGGCGUCGa -3'
miRNA:   3'- -CCGCAGag-CGGGagGAGGU-CCGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 77749 0.72 0.298087
Target:  5'- gGGCGgcCUcCGCCCUCC-CCGGGCuCCu -3'
miRNA:   3'- -CCGCa-GA-GCGGGAGGaGGUCCGcGGc -5'
21419 5' -63.2 NC_004812.1 + 155313 0.72 0.311367
Target:  5'- gGGgGUCggCGCCCcgCCUCCggggacccuGGGgGCCGg -3'
miRNA:   3'- -CCgCAGa-GCGGGa-GGAGG---------UCCgCGGC- -5'
21419 5' -63.2 NC_004812.1 + 83981 0.73 0.249363
Target:  5'- gGGCGUCgcgGCCCggcCCUCCuugggGGGCGUCGc -3'
miRNA:   3'- -CCGCAGag-CGGGa--GGAGG-----UCCGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 103632 0.73 0.243757
Target:  5'- cGGCGgua-GCUCUCCUCgCGGGCGCgGa -3'
miRNA:   3'- -CCGCagagCGGGAGGAG-GUCCGCGgC- -5'
21419 5' -63.2 NC_004812.1 + 77125 0.74 0.227568
Target:  5'- uGGUGgagCgCGUCCUCggCCAGGCGCCGc -3'
miRNA:   3'- -CCGCa--GaGCGGGAGgaGGUCCGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 93470 0.78 0.125284
Target:  5'- cGGCGgCUCcCCCUCCcCCGGGgGCCGa -3'
miRNA:   3'- -CCGCaGAGcGGGAGGaGGUCCgCGGC- -5'
21419 5' -63.2 NC_004812.1 + 18269 0.77 0.138167
Target:  5'- aGGCGUCgugCGCgauccgcagggCCUCCUCCGcgccGGCGCCa -3'
miRNA:   3'- -CCGCAGa--GCG-----------GGAGGAGGU----CCGCGGc -5'
21419 5' -63.2 NC_004812.1 + 74892 0.77 0.141572
Target:  5'- cGCGUCUCGCCgagcgCgUCCAGGCGCgCGu -3'
miRNA:   3'- cCGCAGAGCGGga---GgAGGUCCGCG-GC- -5'
21419 5' -63.2 NC_004812.1 + 130184 0.76 0.175837
Target:  5'- cGCGcCUCGUCCaCCUCCGGcGCGCCc -3'
miRNA:   3'- cCGCaGAGCGGGaGGAGGUC-CGCGGc -5'
21419 5' -63.2 NC_004812.1 + 57662 0.75 0.18007
Target:  5'- aGGuCGUC-CGCggccccgggUCUCUUCCGGGCGCCGg -3'
miRNA:   3'- -CC-GCAGaGCG---------GGAGGAGGUCCGCGGC- -5'
21419 5' -63.2 NC_004812.1 + 137349 0.75 0.197917
Target:  5'- cGGCG-CUCGCCCggcagCUgCUGGGCGCCa -3'
miRNA:   3'- -CCGCaGAGCGGGa----GGaGGUCCGCGGc -5'
21419 5' -63.2 NC_004812.1 + 80077 0.75 0.202614
Target:  5'- cGCGUCcacgcccCGCCCUCgaCCAGGCaGCCGu -3'
miRNA:   3'- cCGCAGa------GCGGGAGgaGGUCCG-CGGC- -5'
21419 5' -63.2 NC_004812.1 + 129610 0.74 0.217287
Target:  5'- cGGCGgggC-CGUCCUCC-CC-GGCGCCGg -3'
miRNA:   3'- -CCGCa--GaGCGGGAGGaGGuCCGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.