Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2142 | 3' | -59.7 | NC_001362.1 | + | 1171 | 1.05 | 3e-05 |
Target: 5'- cAGAAGGAGCCCCUGACCCUUCCCCAAu -3' miRNA: 3'- -UCUUCCUCGGGGACUGGGAAGGGGUU- -5' |
|||||||
2142 | 3' | -59.7 | NC_001362.1 | + | 2268 | 0.86 | 0.001589 |
Target: 5'- aGGggGGGGCUCCUGACCCUgaccUCCCUAAu -3' miRNA: 3'- -UCuuCCUCGGGGACUGGGA----AGGGGUU- -5' |
|||||||
2142 | 3' | -59.7 | NC_001362.1 | + | 2241 | 0.67 | 0.075008 |
Target: 5'- aGGGucAGGAGCCCCc--CCCUgaaCCCAGg -3' miRNA: 3'- -UCU--UCCUCGGGGacuGGGAag-GGGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home