miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21420 3' -54.1 NC_004812.1 + 977 0.66 0.953394
Target:  5'- cCUGgGGGUCCGGG-GUCgcCGgg-GUc -3'
miRNA:   3'- -GACaCCCAGGCCCaCAGauGCauaCA- -5'
21420 3' -54.1 NC_004812.1 + 31878 0.66 0.949272
Target:  5'- cCUGgGGGUCCGGG-GUCgcCGgggGUc -3'
miRNA:   3'- -GACaCCCAGGCCCaCAGauGCauaCA- -5'
21420 3' -54.1 NC_004812.1 + 31774 0.66 0.949272
Target:  5'- cCUGgGGGUCCGGG-GUCgcCGgggGUc -3'
miRNA:   3'- -GACaCCCAGGCCCaCAGauGCauaCA- -5'
21420 3' -54.1 NC_004812.1 + 31826 0.66 0.949272
Target:  5'- cCUGgGGGUCCGGG-GUCgcCGgggGUc -3'
miRNA:   3'- -GACaCCCAGGCCCaCAGauGCauaCA- -5'
21420 3' -54.1 NC_004812.1 + 31852 0.66 0.949272
Target:  5'- cCUGgGGGUCCGGG-GUCgcCGgggGUc -3'
miRNA:   3'- -GACaCCCAGGCCCaCAGauGCauaCA- -5'
21420 3' -54.1 NC_004812.1 + 951 0.66 0.949272
Target:  5'- cCUGgGGGUCCGGG-GUCgcCGgggGUc -3'
miRNA:   3'- -GACaCCCAGGCCCaCAGauGCauaCA- -5'
21420 3' -54.1 NC_004812.1 + 925 0.66 0.949272
Target:  5'- cCUGgGGGUCCGGG-GUCgcCGgggGUc -3'
miRNA:   3'- -GACaCCCAGGCCCaCAGauGCauaCA- -5'
21420 3' -54.1 NC_004812.1 + 899 0.66 0.949272
Target:  5'- cCUGgGGGUCCGGG-GUCgcCGgggGUc -3'
miRNA:   3'- -GACaCCCAGGCCCaCAGauGCauaCA- -5'
21420 3' -54.1 NC_004812.1 + 873 0.66 0.949272
Target:  5'- cCUGgGGGUCCGGG-GUCgcCGgggGUc -3'
miRNA:   3'- -GACaCCCAGGCCCaCAGauGCauaCA- -5'
21420 3' -54.1 NC_004812.1 + 31800 0.66 0.949272
Target:  5'- cCUGgGGGUCCGGG-GUCgcCGgggGUc -3'
miRNA:   3'- -GACaCCCAGGCCCaCAGauGCauaCA- -5'
21420 3' -54.1 NC_004812.1 + 84967 0.67 0.944915
Target:  5'- -cGUGGGgCCGGGUGUUggaggccucgACG-AUGg -3'
miRNA:   3'- gaCACCCaGGCCCACAGa---------UGCaUACa -5'
21420 3' -54.1 NC_004812.1 + 107080 0.68 0.913718
Target:  5'- aCUGggGGGUUCGGGUcuaccgGCGUGUGa -3'
miRNA:   3'- -GACa-CCCAGGCCCAcaga--UGCAUACa -5'
21420 3' -54.1 NC_004812.1 + 129016 0.68 0.894867
Target:  5'- ---cGGGUCCGGGgg-CUACGgcgagGUGg -3'
miRNA:   3'- gacaCCCAGGCCCacaGAUGCa----UACa -5'
21420 3' -54.1 NC_004812.1 + 104768 1 0.017986
Target:  5'- cCUGUGGGUCCGGGUGUCUACGUuGUGUu -3'
miRNA:   3'- -GACACCCAGGCCCACAGAUGCA-UACA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.