Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21420 | 5' | -55 | NC_004812.1 | + | 138264 | 0.66 | 0.925265 |
Target: 5'- cGGCggCCgCGGUcGcGCGCCGCGcCCUGCg -3' miRNA: 3'- uUUGa-GG-GCCAuC-UGUGGCGU-GGAUG- -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 131908 | 0.66 | 0.921932 |
Target: 5'- gAGACgcucgCCCGGauaUGGGCcucgcgggaucccguGCCGCgACCUGCu -3' miRNA: 3'- -UUUGa----GGGCC---AUCUG---------------UGGCG-UGGAUG- -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 74321 | 0.66 | 0.919661 |
Target: 5'- ----gCCCGGU-GACGCCgacggaGCACCUGg -3' miRNA: 3'- uuugaGGGCCAuCUGUGG------CGUGGAUg -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 143369 | 0.66 | 0.919661 |
Target: 5'- --cCUCCCGGUAcgagcuGACgACCGCGCg--- -3' miRNA: 3'- uuuGAGGGCCAU------CUG-UGGCGUGgaug -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 140409 | 0.66 | 0.919661 |
Target: 5'- -cGCggCCCGGguc-CGCCGCGCgCUGCu -3' miRNA: 3'- uuUGa-GGGCCaucuGUGGCGUG-GAUG- -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 97131 | 0.66 | 0.91735 |
Target: 5'- gAGACggCCCGGgccgucaugcaggAGACguACCGCGCCgcgACc -3' miRNA: 3'- -UUUGa-GGGCCa------------UCUG--UGGCGUGGa--UG- -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 13304 | 0.66 | 0.91381 |
Target: 5'- -uGCgcagCCUGGUGGuCACCGCgAUCUGg -3' miRNA: 3'- uuUGa---GGGCCAUCuGUGGCG-UGGAUg -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 81389 | 0.66 | 0.91381 |
Target: 5'- cGugUCCUGGUAGGCGgCGCAgUa-- -3' miRNA: 3'- uUugAGGGCCAUCUGUgGCGUgGaug -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 103189 | 0.66 | 0.91381 |
Target: 5'- cGGC-CCCGGgcuccucGGugGCCGCGCUgcggACg -3' miRNA: 3'- uUUGaGGGCCa------UCugUGGCGUGGa---UG- -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 47399 | 0.66 | 0.91381 |
Target: 5'- -cGC-CCCGccgGGGCACCGUACCa-- -3' miRNA: 3'- uuUGaGGGCca-UCUGUGGCGUGGaug -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 154314 | 0.66 | 0.91381 |
Target: 5'- -uGCUCgagCCGGaccccGACGCCGCGCCg-- -3' miRNA: 3'- uuUGAG---GGCCau---CUGUGGCGUGGaug -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 138465 | 0.66 | 0.91381 |
Target: 5'- gGGGCUgUCGGggcgGGGCGCCGC-CCUc- -3' miRNA: 3'- -UUUGAgGGCCa---UCUGUGGCGuGGAug -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 28806 | 0.66 | 0.91381 |
Target: 5'- -uGCUCgagCCGGaccccGACGCCGCGCCg-- -3' miRNA: 3'- uuUGAG---GGCCau---CUGUGGCGUGGaug -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 60666 | 0.66 | 0.91381 |
Target: 5'- uGAGCUCCUGGauGACgaGCCGCugCg-- -3' miRNA: 3'- -UUUGAGGGCCauCUG--UGGCGugGaug -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 86871 | 0.66 | 0.913212 |
Target: 5'- --gUUCCUGGgcGACGCCgGCaagcgcgaccccaGCCUGCu -3' miRNA: 3'- uuuGAGGGCCauCUGUGG-CG-------------UGGAUG- -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 31355 | 0.66 | 0.907715 |
Target: 5'- -cGCgagCCCGGgccGcCGgCGCGCCUGCg -3' miRNA: 3'- uuUGa--GGGCCau-CuGUgGCGUGGAUG- -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 67143 | 0.66 | 0.907715 |
Target: 5'- cGGACgaccucggCCCGG-AGGCGCCGCaggGCCaGCc -3' miRNA: 3'- -UUUGa-------GGGCCaUCUGUGGCG---UGGaUG- -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 24493 | 0.66 | 0.907715 |
Target: 5'- -cGCUCCUGGacgggGGGCccCCGCGCCg-- -3' miRNA: 3'- uuUGAGGGCCa----UCUGu-GGCGUGGaug -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 454 | 0.66 | 0.907715 |
Target: 5'- -cGCgagCCCGGgccGcCGgCGCGCCUGCg -3' miRNA: 3'- uuUGa--GGGCCau-CuGUgGCGUGGAUG- -5' |
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21420 | 5' | -55 | NC_004812.1 | + | 32689 | 0.67 | 0.901376 |
Target: 5'- cGGGCcggCCCGGgaccgcGGGCGCCaGCACCUc- -3' miRNA: 3'- -UUUGa--GGGCCa-----UCUGUGG-CGUGGAug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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