miRNA display CGI


Results 1 - 20 of 298 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21421 3' -56 NC_004812.1 + 136240 0.66 0.924326
Target:  5'- -aCAACgCCCAUGucgcuauauuaagacGcccGGGCCC-GUGCCCg -3'
miRNA:   3'- gcGUUG-GGGUAC---------------U---UCCGGGaCAUGGG- -5'
21421 3' -56 NC_004812.1 + 32367 0.66 0.92214
Target:  5'- cCGCGcgcGCCCCccGccAGGCCCgccgccagGUGCgCCg -3'
miRNA:   3'- -GCGU---UGGGGuaCu-UCCGGGa-------CAUG-GG- -5'
21421 3' -56 NC_004812.1 + 3411 0.66 0.92214
Target:  5'- cCGCcuCCCCccGgcGGCCCUccgGCgCCg -3'
miRNA:   3'- -GCGuuGGGGuaCuuCCGGGAca-UG-GG- -5'
21421 3' -56 NC_004812.1 + 34312 0.66 0.92214
Target:  5'- cCGCcuCCCCccGgcGGCCCUccgGCgCCg -3'
miRNA:   3'- -GCGuuGGGGuaCuuCCGGGAca-UG-GG- -5'
21421 3' -56 NC_004812.1 + 108354 0.66 0.92214
Target:  5'- aGCGcCCCCGUGAcccGGUCCagGUugCg -3'
miRNA:   3'- gCGUuGGGGUACUu--CCGGGa-CAugGg -5'
21421 3' -56 NC_004812.1 + 143348 0.66 0.92214
Target:  5'- cCGCcGCCCCGacgucGGAGGCCUcccgGUACg- -3'
miRNA:   3'- -GCGuUGGGGUa----CUUCCGGGa---CAUGgg -5'
21421 3' -56 NC_004812.1 + 116118 0.66 0.92214
Target:  5'- cCGCGcccGCCCUc--GGGGCCCgg-GCCCc -3'
miRNA:   3'- -GCGU---UGGGGuacUUCCGGGacaUGGG- -5'
21421 3' -56 NC_004812.1 + 77664 0.66 0.92214
Target:  5'- cCGCGucGCCCCcuccacGGCCUUcUGCCCg -3'
miRNA:   3'- -GCGU--UGGGGuacuu-CCGGGAcAUGGG- -5'
21421 3' -56 NC_004812.1 + 140693 0.66 0.92214
Target:  5'- cCGCGACCCCAcccccGCCCgccGUGCUUc -3'
miRNA:   3'- -GCGUUGGGGUacuucCGGGa--CAUGGG- -5'
21421 3' -56 NC_004812.1 + 112242 0.66 0.92214
Target:  5'- cCGCGggcugcGCCCCGggcacGCCCUuUGCCCg -3'
miRNA:   3'- -GCGU------UGGGGUacuucCGGGAcAUGGG- -5'
21421 3' -56 NC_004812.1 + 124738 0.66 0.916509
Target:  5'- gGCGACCCCG-GAccccAGGaCCCccGgcgACCCc -3'
miRNA:   3'- gCGUUGGGGUaCU----UCC-GGGa-Ca--UGGG- -5'
21421 3' -56 NC_004812.1 + 53847 0.66 0.916509
Target:  5'- aGCggUCCgCGgcguAGGCCgUGUGCUCg -3'
miRNA:   3'- gCGuuGGG-GUacu-UCCGGgACAUGGG- -5'
21421 3' -56 NC_004812.1 + 87769 0.66 0.916509
Target:  5'- aGCAucauGCCCacccucAAGGCCCUGgACUCg -3'
miRNA:   3'- gCGU----UGGGguac--UUCCGGGACaUGGG- -5'
21421 3' -56 NC_004812.1 + 4569 0.66 0.916509
Target:  5'- gCGCcACCCUugGAcccccGGGCCCgccgACCCg -3'
miRNA:   3'- -GCGuUGGGGuaCU-----UCCGGGaca-UGGG- -5'
21421 3' -56 NC_004812.1 + 142277 0.66 0.916509
Target:  5'- uGCGGCUCCcgGAgcuccuggacgaGGGCCCcGgGCCg -3'
miRNA:   3'- gCGUUGGGGuaCU------------UCCGGGaCaUGGg -5'
21421 3' -56 NC_004812.1 + 116793 0.66 0.916509
Target:  5'- gGCAaccgGCCCCAaGcAGGGCaCC-GUGCCa -3'
miRNA:   3'- gCGU----UGGGGUaC-UUCCG-GGaCAUGGg -5'
21421 3' -56 NC_004812.1 + 141546 0.66 0.916509
Target:  5'- gCGCcAUCCCGauccucgucaUGGAGuacGCCgaGUGCCCg -3'
miRNA:   3'- -GCGuUGGGGU----------ACUUC---CGGgaCAUGGG- -5'
21421 3' -56 NC_004812.1 + 2203 0.66 0.916509
Target:  5'- uCGCGGCCU--UGGAgccccGGCCCg--GCCCg -3'
miRNA:   3'- -GCGUUGGGguACUU-----CCGGGacaUGGG- -5'
21421 3' -56 NC_004812.1 + 49772 0.66 0.916509
Target:  5'- aCGCAcacccacaaaggGCCCCGc--GGGCCCUcccgcgggGCCCa -3'
miRNA:   3'- -GCGU------------UGGGGUacuUCCGGGAca------UGGG- -5'
21421 3' -56 NC_004812.1 + 109278 0.66 0.916509
Target:  5'- gCGCGACCgCA--GAGGCcuaCCUGcgcGCCCg -3'
miRNA:   3'- -GCGUUGGgGUacUUCCG---GGACa--UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.