miRNA display CGI


Results 21 - 40 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21421 3' -56 NC_004812.1 + 53847 0.66 0.916509
Target:  5'- aGCggUCCgCGgcguAGGCCgUGUGCUCg -3'
miRNA:   3'- gCGuuGGG-GUacu-UCCGGgACAUGGG- -5'
21421 3' -56 NC_004812.1 + 14304 0.66 0.916509
Target:  5'- gCGC-GCCCCGccgcGccGGCCCgggGCCCu -3'
miRNA:   3'- -GCGuUGGGGUa---CuuCCGGGacaUGGG- -5'
21421 3' -56 NC_004812.1 + 757 0.66 0.916509
Target:  5'- gCGCGACCCUcuuccccgucUGAGGGCCCcgcgggagaUGgGCCg -3'
miRNA:   3'- -GCGUUGGGGu---------ACUUCCGGG---------ACaUGGg -5'
21421 3' -56 NC_004812.1 + 30099 0.66 0.916509
Target:  5'- gCGCGGCCCCGgccgGGcAGGCCUaGUGaagaUCg -3'
miRNA:   3'- -GCGUUGGGGUa---CU-UCCGGGaCAUg---GG- -5'
21421 3' -56 NC_004812.1 + 122775 0.66 0.916509
Target:  5'- uGCGgaacACCCCGgggugGAGGGCCagg-ACCUg -3'
miRNA:   3'- gCGU----UGGGGUa----CUUCCGGgacaUGGG- -5'
21421 3' -56 NC_004812.1 + 110123 0.66 0.916509
Target:  5'- -cCAACCUCGUGcucGGGGCCCU---CCCu -3'
miRNA:   3'- gcGUUGGGGUAC---UUCCGGGAcauGGG- -5'
21421 3' -56 NC_004812.1 + 49772 0.66 0.916509
Target:  5'- aCGCAcacccacaaaggGCCCCGc--GGGCCCUcccgcgggGCCCa -3'
miRNA:   3'- -GCGU------------UGGGGUacuUCCGGGAca------UGGG- -5'
21421 3' -56 NC_004812.1 + 4569 0.66 0.916509
Target:  5'- gCGCcACCCUugGAcccccGGGCCCgccgACCCg -3'
miRNA:   3'- -GCGuUGGGGuaCU-----UCCGGGaca-UGGG- -5'
21421 3' -56 NC_004812.1 + 124738 0.66 0.916509
Target:  5'- gGCGACCCCG-GAccccAGGaCCCccGgcgACCCc -3'
miRNA:   3'- gCGUUGGGGUaCU----UCC-GGGa-Ca--UGGG- -5'
21421 3' -56 NC_004812.1 + 109278 0.66 0.916509
Target:  5'- gCGCGACCgCA--GAGGCcuaCCUGcgcGCCCg -3'
miRNA:   3'- -GCGUUGGgGUacUUCCG---GGACa--UGGG- -5'
21421 3' -56 NC_004812.1 + 116793 0.66 0.916509
Target:  5'- gGCAaccgGCCCCAaGcAGGGCaCC-GUGCCa -3'
miRNA:   3'- gCGU----UGGGGUaC-UUCCG-GGaCAUGGg -5'
21421 3' -56 NC_004812.1 + 86852 0.66 0.916509
Target:  5'- aCGCGGCCgCCAUGGcucGGuUCCUGggcgACgCCg -3'
miRNA:   3'- -GCGUUGG-GGUACUu--CC-GGGACa---UG-GG- -5'
21421 3' -56 NC_004812.1 + 108972 0.66 0.910642
Target:  5'- gCGgGACCCgGUGggGaggcggcuuuGCCCcGaGCCCg -3'
miRNA:   3'- -GCgUUGGGgUACuuC----------CGGGaCaUGGG- -5'
21421 3' -56 NC_004812.1 + 83211 0.66 0.910642
Target:  5'- gGCGGCCgCGcucGggGGCCUcGgugGCCCc -3'
miRNA:   3'- gCGUUGGgGUa--CuuCCGGGaCa--UGGG- -5'
21421 3' -56 NC_004812.1 + 74798 0.66 0.910642
Target:  5'- aCGCGcCCCCGc--GGGCCC---GCCCg -3'
miRNA:   3'- -GCGUuGGGGUacuUCCGGGacaUGGG- -5'
21421 3' -56 NC_004812.1 + 105276 0.66 0.910642
Target:  5'- gGCGACUCCGaGGgcGGGCCUg--GCCUg -3'
miRNA:   3'- gCGUUGGGGUaCU--UCCGGGacaUGGG- -5'
21421 3' -56 NC_004812.1 + 32804 0.66 0.910642
Target:  5'- cCGCGgcACCCCGUauauGGGCCgaGgcUCCg -3'
miRNA:   3'- -GCGU--UGGGGUAcu--UCCGGgaCauGGG- -5'
21421 3' -56 NC_004812.1 + 1903 0.66 0.910642
Target:  5'- cCGCGgcACCCCGUauauGGGCCgaGgcUCCg -3'
miRNA:   3'- -GCGU--UGGGGUAcu--UCCGGgaCauGGG- -5'
21421 3' -56 NC_004812.1 + 84900 0.66 0.910642
Target:  5'- aGCGACUUCcc---GGCCCUG-GCCCg -3'
miRNA:   3'- gCGUUGGGGuacuuCCGGGACaUGGG- -5'
21421 3' -56 NC_004812.1 + 110046 0.66 0.908836
Target:  5'- gCGCuACCUCAUGggGaGCCUgucgcugccgaccgUGUugUCg -3'
miRNA:   3'- -GCGuUGGGGUACuuC-CGGG--------------ACAugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.