miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21421 5' -58.9 NC_004812.1 + 32036 0.66 0.82486
Target:  5'- cGGGGGCUCcAGGcccGCGAugaccgccuCGGcGUCGUCGc -3'
miRNA:   3'- -UCCUCGAGuUCU---CGCU---------GCC-CGGCAGC- -5'
21421 5' -58.9 NC_004812.1 + 129235 0.66 0.82486
Target:  5'- cGGAGCgCAccuGGCG-CGGGCCG-CGc -3'
miRNA:   3'- uCCUCGaGUuc-UCGCuGCCCGGCaGC- -5'
21421 5' -58.9 NC_004812.1 + 27717 0.66 0.82486
Target:  5'- cAGGAcGgaCGagggGGGGCGGgGGGCCG-CGg -3'
miRNA:   3'- -UCCU-CgaGU----UCUCGCUgCCCGGCaGC- -5'
21421 5' -58.9 NC_004812.1 + 45754 0.66 0.82486
Target:  5'- cGGAGCcCGAGGGgagaCGGCGaGGgCGUCu -3'
miRNA:   3'- uCCUCGaGUUCUC----GCUGC-CCgGCAGc -5'
21421 5' -58.9 NC_004812.1 + 3727 0.66 0.82486
Target:  5'- cGGAGCgCAccuGGCG-CGGGCCG-CGc -3'
miRNA:   3'- uCCUCGaGUuc-UCGCuGCCCGGCaGC- -5'
21421 5' -58.9 NC_004812.1 + 13284 0.66 0.82486
Target:  5'- cGGAGgcCUC-GGcGCGGCGGGgCGUCc -3'
miRNA:   3'- uCCUC--GAGuUCuCGCUGCCCgGCAGc -5'
21421 5' -58.9 NC_004812.1 + 49206 0.66 0.82486
Target:  5'- uGGGcauGCUCAucccGGgGGCGGuGCCGUCc -3'
miRNA:   3'- -UCCu--CGAGUuc--UCgCUGCC-CGGCAGc -5'
21421 5' -58.9 NC_004812.1 + 44202 0.66 0.82486
Target:  5'- uGGGGCUCGGcGGCGGCGcGGaCGggCGa -3'
miRNA:   3'- uCCUCGAGUUcUCGCUGC-CCgGCa-GC- -5'
21421 5' -58.9 NC_004812.1 + 152395 0.66 0.816492
Target:  5'- gGGGAGgU--AGcGCGugGGGCCGggCGc -3'
miRNA:   3'- -UCCUCgAguUCuCGCugCCCGGCa-GC- -5'
21421 5' -58.9 NC_004812.1 + 121494 0.66 0.816492
Target:  5'- gGGGAGgU--AGcGCGugGGGCCGggCGc -3'
miRNA:   3'- -UCCUCgAguUCuCGCugCCCGGCa-GC- -5'
21421 5' -58.9 NC_004812.1 + 69933 0.66 0.816492
Target:  5'- uGGGGCUgCGAGAGau-CGuguuGGCCGUCa -3'
miRNA:   3'- uCCUCGA-GUUCUCgcuGC----CCGGCAGc -5'
21421 5' -58.9 NC_004812.1 + 57044 0.66 0.816492
Target:  5'- aAGaGGGC-CAGGAGCuucugcCGGGCCG-CGg -3'
miRNA:   3'- -UC-CUCGaGUUCUCGcu----GCCCGGCaGC- -5'
21421 5' -58.9 NC_004812.1 + 13443 0.66 0.816492
Target:  5'- cGGGGGacgccgugguCUCGGGGGUGGgGGGUggCGUCGc -3'
miRNA:   3'- -UCCUC----------GAGUUCUCGCUgCCCG--GCAGC- -5'
21421 5' -58.9 NC_004812.1 + 123148 0.66 0.816492
Target:  5'- cGGGGUcgucgUCGAcgacGGCGGCGGcGUCGUCGu -3'
miRNA:   3'- uCCUCG-----AGUUc---UCGCUGCC-CGGCAGC- -5'
21421 5' -58.9 NC_004812.1 + 106759 0.66 0.816492
Target:  5'- gGGGGGgUCGgaGGAGgGGCGGcGUCGggCGg -3'
miRNA:   3'- -UCCUCgAGU--UCUCgCUGCC-CGGCa-GC- -5'
21421 5' -58.9 NC_004812.1 + 154049 0.66 0.816492
Target:  5'- cGGGGUcgucgUCGAcgacGGCGGCGGcGUCGUCGu -3'
miRNA:   3'- uCCUCG-----AGUUc---UCGCUGCC-CGGCAGC- -5'
21421 5' -58.9 NC_004812.1 + 129405 0.66 0.811394
Target:  5'- uGGAcGCUgAcgccgcgucgcuGCGGCGGGCCGUCc -3'
miRNA:   3'- uCCU-CGAgUucu---------CGCUGCCCGGCAGc -5'
21421 5' -58.9 NC_004812.1 + 45472 0.66 0.807965
Target:  5'- aGGGAGCgcacggCGAGcauGGCGGCGGcCCGgCGu -3'
miRNA:   3'- -UCCUCGa-----GUUC---UCGCUGCCcGGCaGC- -5'
21421 5' -58.9 NC_004812.1 + 98671 0.66 0.807965
Target:  5'- cGGGGgUCGAGccGgGGCGGGCgCgGUCGa -3'
miRNA:   3'- uCCUCgAGUUCu-CgCUGCCCG-G-CAGC- -5'
21421 5' -58.9 NC_004812.1 + 148179 0.66 0.807965
Target:  5'- uGGGAGCggAAGGGUGAgcggccucaCGGGUCGagGg -3'
miRNA:   3'- -UCCUCGagUUCUCGCU---------GCCCGGCagC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.