miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21421 5' -58.9 NC_004812.1 + 104274 1.07 0.002126
Target:  5'- aAGGAGCUCAAGAGCGACGGGCCGUCGc -3'
miRNA:   3'- -UCCUCGAGUUCUCGCUGCCCGGCAGC- -5'
21421 5' -58.9 NC_004812.1 + 96395 0.9 0.035226
Target:  5'- uGGAGUUCGGGAGCGGCGaGGCCGUCu -3'
miRNA:   3'- uCCUCGAGUUCUCGCUGC-CCGGCAGc -5'
21421 5' -58.9 NC_004812.1 + 81967 0.79 0.193682
Target:  5'- cGGGGC-CAAGAGCGccgagcgggcGgGGGCCGUCGa -3'
miRNA:   3'- uCCUCGaGUUCUCGC----------UgCCCGGCAGC- -5'
21421 5' -58.9 NC_004812.1 + 155477 0.77 0.240335
Target:  5'- aAGGAGCUCcgGAGAuGCGAUGGGCCccggCGa -3'
miRNA:   3'- -UCCUCGAG--UUCU-CGCUGCCCGGca--GC- -5'
21421 5' -58.9 NC_004812.1 + 124576 0.77 0.240335
Target:  5'- aAGGAGCUCcgGAGAuGCGAUGGGCCccggCGa -3'
miRNA:   3'- -UCCUCGAG--UUCU-CGCUGCCCGGca--GC- -5'
21421 5' -58.9 NC_004812.1 + 13399 0.77 0.240335
Target:  5'- cGGGGGCgcggCGGGGGUGACGgccggagggguGGCCGUCGu -3'
miRNA:   3'- -UCCUCGa---GUUCUCGCUGC-----------CCGGCAGC- -5'
21421 5' -58.9 NC_004812.1 + 156124 0.77 0.257853
Target:  5'- cGGGAGa--AGGGGUGACGGGCCGcgCGg -3'
miRNA:   3'- -UCCUCgagUUCUCGCUGCCCGGCa-GC- -5'
21421 5' -58.9 NC_004812.1 + 30616 0.77 0.257853
Target:  5'- cGGGAGa--AGGGGUGACGGGCCGcgCGg -3'
miRNA:   3'- -UCCUCgagUUCUCGCUGCCCGGCa-GC- -5'
21421 5' -58.9 NC_004812.1 + 39534 0.76 0.276402
Target:  5'- uGGGcuGCUCGacGGGGUG-CGGGCCGUCGc -3'
miRNA:   3'- -UCCu-CGAGU--UCUCGCuGCCCGGCAGC- -5'
21421 5' -58.9 NC_004812.1 + 128011 0.75 0.331032
Target:  5'- -cGGGCgggCGAGucGGCGGCGcGGCCGUCGa -3'
miRNA:   3'- ucCUCGa--GUUC--UCGCUGC-CCGGCAGC- -5'
21421 5' -58.9 NC_004812.1 + 2503 0.75 0.331032
Target:  5'- -cGGGCgggCGAGucGGCGGCGcGGCCGUCGa -3'
miRNA:   3'- ucCUCGa--GUUC--UCGCUGC-CCGGCAGC- -5'
21421 5' -58.9 NC_004812.1 + 103228 0.75 0.331032
Target:  5'- cGGGAGCUCcuccgcgagcAGGAGCGGCGG-CCGggCGa -3'
miRNA:   3'- -UCCUCGAG----------UUCUCGCUGCCcGGCa-GC- -5'
21421 5' -58.9 NC_004812.1 + 79402 0.74 0.345875
Target:  5'- cGGcGAGCUCGAGAGCGA--GGCCGcguUCGa -3'
miRNA:   3'- -UC-CUCGAGUUCUCGCUgcCCGGC---AGC- -5'
21421 5' -58.9 NC_004812.1 + 17950 0.74 0.369021
Target:  5'- gAGGGGgUCGcccGGGCGACGGcgGCCGUCa -3'
miRNA:   3'- -UCCUCgAGUu--CUCGCUGCC--CGGCAGc -5'
21421 5' -58.9 NC_004812.1 + 155222 0.74 0.376969
Target:  5'- aGGGGGCgc-GGcGCGggGCGGGCCGUCGc -3'
miRNA:   3'- -UCCUCGaguUCuCGC--UGCCCGGCAGC- -5'
21421 5' -58.9 NC_004812.1 + 124321 0.74 0.376969
Target:  5'- aGGGGGCgc-GGcGCGggGCGGGCCGUCGc -3'
miRNA:   3'- -UCCUCGaguUCuCGC--UGCCCGGCAGC- -5'
21421 5' -58.9 NC_004812.1 + 132765 0.74 0.385031
Target:  5'- --cGGCUCGAGGGCGGCgccGGGCCGggcCGg -3'
miRNA:   3'- uccUCGAGUUCUCGCUG---CCCGGCa--GC- -5'
21421 5' -58.9 NC_004812.1 + 106133 0.73 0.392384
Target:  5'- gAGGuGGCUuuuaccccCGGGAGCGGCucggcguccggcuGGGCCGUCGg -3'
miRNA:   3'- -UCC-UCGA--------GUUCUCGCUG-------------CCCGGCAGC- -5'
21421 5' -58.9 NC_004812.1 + 142286 0.73 0.401494
Target:  5'- cGGAGCUCcuggacGAGGGCccCGGGCCGgcgCGg -3'
miRNA:   3'- uCCUCGAG------UUCUCGcuGCCCGGCa--GC- -5'
21421 5' -58.9 NC_004812.1 + 6523 0.73 0.409892
Target:  5'- cAGGAGCagGggGGGGCGGgGGGCCGagGg -3'
miRNA:   3'- -UCCUCGagU--UCUCGCUgCCCGGCagC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.