miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21422 3' -58.7 NC_004812.1 + 52965 0.66 0.792494
Target:  5'- ---cGCGCCGAGcUCC-GCGCcCGCGAg -3'
miRNA:   3'- cugaUGUGGCUCcAGGuCGCG-GCGUU- -5'
21422 3' -58.7 NC_004812.1 + 130724 0.66 0.792494
Target:  5'- gGGCgcggGCGCCgcgGAGGgCCGGCcGCCGCc- -3'
miRNA:   3'- -CUGa---UGUGG---CUCCaGGUCG-CGGCGuu -5'
21422 3' -58.7 NC_004812.1 + 138238 0.66 0.792494
Target:  5'- cGAUgugggGC-CCGcGGGcCCGGCGCCGCc- -3'
miRNA:   3'- -CUGa----UGuGGC-UCCaGGUCGCGGCGuu -5'
21422 3' -58.7 NC_004812.1 + 123503 0.66 0.792494
Target:  5'- aGCgggGguCUGGGGUCgGGCGCCGgGAg -3'
miRNA:   3'- cUGa--UguGGCUCCAGgUCGCGGCgUU- -5'
21422 3' -58.7 NC_004812.1 + 77836 0.66 0.792494
Target:  5'- ---cGCGCCaGGcGUCCagGGCGCCGCGc -3'
miRNA:   3'- cugaUGUGGcUC-CAGG--UCGCGGCGUu -5'
21422 3' -58.7 NC_004812.1 + 58826 0.66 0.783393
Target:  5'- uGGCcGCcuCCGAGGcguuggcgCCGGCGCCGgCAAa -3'
miRNA:   3'- -CUGaUGu-GGCUCCa-------GGUCGCGGC-GUU- -5'
21422 3' -58.7 NC_004812.1 + 26924 0.66 0.783393
Target:  5'- ----cCGCCG-GGUaCGGCGCCGCGGg -3'
miRNA:   3'- cugauGUGGCuCCAgGUCGCGGCGUU- -5'
21422 3' -58.7 NC_004812.1 + 59399 0.66 0.783393
Target:  5'- cGACguggGCACCGccGGGUCCAcGUaCUGCAGg -3'
miRNA:   3'- -CUGa---UGUGGC--UCCAGGU-CGcGGCGUU- -5'
21422 3' -58.7 NC_004812.1 + 152432 0.66 0.783393
Target:  5'- ----cCGCCG-GGUaCGGCGCCGCGGg -3'
miRNA:   3'- cugauGUGGCuCCAgGUCGCGGCGUU- -5'
21422 3' -58.7 NC_004812.1 + 143332 0.66 0.783393
Target:  5'- cGCcGCGCCGAGG-CCucCGCCGCc- -3'
miRNA:   3'- cUGaUGUGGCUCCaGGucGCGGCGuu -5'
21422 3' -58.7 NC_004812.1 + 128784 0.66 0.783393
Target:  5'- cGCgcgGCGagCGAGG-CCAGCGCgCGCGGg -3'
miRNA:   3'- cUGa--UGUg-GCUCCaGGUCGCG-GCGUU- -5'
21422 3' -58.7 NC_004812.1 + 3276 0.66 0.783393
Target:  5'- cGCgcgGCGagCGAGG-CCAGCGCgCGCGGg -3'
miRNA:   3'- cUGa--UGUg-GCUCCaGGUCGCG-GCGUU- -5'
21422 3' -58.7 NC_004812.1 + 50491 0.66 0.774158
Target:  5'- gGACgccggGCGCCGAGGcgcucacCCGcGCGCUGCu- -3'
miRNA:   3'- -CUGa----UGUGGCUCCa------GGU-CGCGGCGuu -5'
21422 3' -58.7 NC_004812.1 + 77055 0.66 0.774158
Target:  5'- gGACga-GCCGuucGUCgAGCGCCGCGu -3'
miRNA:   3'- -CUGaugUGGCuc-CAGgUCGCGGCGUu -5'
21422 3' -58.7 NC_004812.1 + 58197 0.66 0.774158
Target:  5'- cGCcGCACCGAGacgcUgCGGCGCCGCc- -3'
miRNA:   3'- cUGaUGUGGCUCc---AgGUCGCGGCGuu -5'
21422 3' -58.7 NC_004812.1 + 112970 0.66 0.774158
Target:  5'- cGACguccgGCGgCGAuGGaUCgCGGCGCCGCGg -3'
miRNA:   3'- -CUGa----UGUgGCU-CC-AG-GUCGCGGCGUu -5'
21422 3' -58.7 NC_004812.1 + 129132 0.66 0.774158
Target:  5'- cGCUugcGCGCCGGcGGgcgCgCGGCGCCGCc- -3'
miRNA:   3'- cUGA---UGUGGCU-CCa--G-GUCGCGGCGuu -5'
21422 3' -58.7 NC_004812.1 + 3624 0.66 0.774158
Target:  5'- cGCUugcGCGCCGGcGGgcgCgCGGCGCCGCc- -3'
miRNA:   3'- cUGA---UGUGGCU-CCa--G-GUCGCGGCGuu -5'
21422 3' -58.7 NC_004812.1 + 40216 0.66 0.774158
Target:  5'- -uCUGCGCgGGGGUCC-GCGuuGUg- -3'
miRNA:   3'- cuGAUGUGgCUCCAGGuCGCggCGuu -5'
21422 3' -58.7 NC_004812.1 + 75010 0.66 0.774158
Target:  5'- cGAC--CGCCGccuGGUCCAGCucgGCCGCc- -3'
miRNA:   3'- -CUGauGUGGCu--CCAGGUCG---CGGCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.