miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21422 5' -56.2 NC_004812.1 + 106510 0.66 0.927342
Target:  5'- gUCCGCggcgcggggCGCCGGCGgccgCGGCGCc-- -3'
miRNA:   3'- gAGGCGaa-------GCGGCUGUa---GCUGUGcca -5'
21422 5' -56.2 NC_004812.1 + 3746 0.66 0.927342
Target:  5'- -gCCGCg-CGCCaGCAgCGGCGCGGc -3'
miRNA:   3'- gaGGCGaaGCGGcUGUaGCUGUGCCa -5'
21422 5' -56.2 NC_004812.1 + 129254 0.66 0.927342
Target:  5'- -gCCGCg-CGCCaGCAgCGGCGCGGc -3'
miRNA:   3'- gaGGCGaaGCGGcUGUaGCUGUGCCa -5'
21422 5' -56.2 NC_004812.1 + 120097 0.66 0.927342
Target:  5'- gUgCGCacCGCCGugAcCGACAUGGg -3'
miRNA:   3'- gAgGCGaaGCGGCugUaGCUGUGCCa -5'
21422 5' -56.2 NC_004812.1 + 2475 0.66 0.927342
Target:  5'- gUCCGgggCGCCGGCGgcggCGGCcucGCGGg -3'
miRNA:   3'- gAGGCgaaGCGGCUGUa---GCUG---UGCCa -5'
21422 5' -56.2 NC_004812.1 + 127983 0.66 0.927342
Target:  5'- gUCCGgggCGCCGGCGgcggCGGCcucGCGGg -3'
miRNA:   3'- gAGGCgaaGCGGCUGUa---GCUG---UGCCa -5'
21422 5' -56.2 NC_004812.1 + 138733 0.66 0.927342
Target:  5'- -cCCGCggcgUGCCGGCcgGUCGccccCGCGGUg -3'
miRNA:   3'- gaGGCGaa--GCGGCUG--UAGCu---GUGCCA- -5'
21422 5' -56.2 NC_004812.1 + 50094 0.66 0.927342
Target:  5'- -gCCGCggcCGCCGGCGccccgCGcCGCGGa -3'
miRNA:   3'- gaGGCGaa-GCGGCUGUa----GCuGUGCCa -5'
21422 5' -56.2 NC_004812.1 + 146051 0.66 0.927342
Target:  5'- -aCCGC-UCGCCGGCA-CGcagaACGCGcGUg -3'
miRNA:   3'- gaGGCGaAGCGGCUGUaGC----UGUGC-CA- -5'
21422 5' -56.2 NC_004812.1 + 57906 0.66 0.927342
Target:  5'- -cCCGCgcCGCCGcCccCGGCGCGGc -3'
miRNA:   3'- gaGGCGaaGCGGCuGuaGCUGUGCCa -5'
21422 5' -56.2 NC_004812.1 + 18156 0.66 0.921987
Target:  5'- -gCCGCgaaaCGCCGcCGUCGGgaGCGGg -3'
miRNA:   3'- gaGGCGaa--GCGGCuGUAGCUg-UGCCa -5'
21422 5' -56.2 NC_004812.1 + 17500 0.66 0.921987
Target:  5'- gCUCC-CggacgUCGCCGACGcgcccUCGGuCGCGGc -3'
miRNA:   3'- -GAGGcGa----AGCGGCUGU-----AGCU-GUGCCa -5'
21422 5' -56.2 NC_004812.1 + 112068 0.66 0.921987
Target:  5'- gCUCUGCUaCGUCGcCAUCGugGCcGUc -3'
miRNA:   3'- -GAGGCGAaGCGGCuGUAGCugUGcCA- -5'
21422 5' -56.2 NC_004812.1 + 19863 0.66 0.921987
Target:  5'- gUCCuCUUCGUCccgGGCGUCGuggGCGCGGg -3'
miRNA:   3'- gAGGcGAAGCGG---CUGUAGC---UGUGCCa -5'
21422 5' -56.2 NC_004812.1 + 110330 0.66 0.921987
Target:  5'- uCUCCGgcUCGCUGACGaugcgcggggUGGCGCGGg -3'
miRNA:   3'- -GAGGCgaAGCGGCUGUa---------GCUGUGCCa -5'
21422 5' -56.2 NC_004812.1 + 100519 0.66 0.921987
Target:  5'- --aCGCgUUCGCCGACAaccucacggagcUCG-CGCGGc -3'
miRNA:   3'- gagGCG-AAGCGGCUGU------------AGCuGUGCCa -5'
21422 5' -56.2 NC_004812.1 + 56234 0.66 0.921987
Target:  5'- -cUCGCggcgCGCCGAC-UCGucCGCGGg -3'
miRNA:   3'- gaGGCGaa--GCGGCUGuAGCu-GUGCCa -5'
21422 5' -56.2 NC_004812.1 + 138262 0.66 0.921987
Target:  5'- -gCCGCcggUgGCCGAUGUCGACAgacaucccgUGGUc -3'
miRNA:   3'- gaGGCGa--AgCGGCUGUAGCUGU---------GCCA- -5'
21422 5' -56.2 NC_004812.1 + 19527 0.66 0.916398
Target:  5'- uUCCGag-C-CCGGCGUCagGGCGCGGUg -3'
miRNA:   3'- gAGGCgaaGcGGCUGUAG--CUGUGCCA- -5'
21422 5' -56.2 NC_004812.1 + 16733 0.66 0.916398
Target:  5'- -cCCGC-UCGCC--CGUCGACGCaGGg -3'
miRNA:   3'- gaGGCGaAGCGGcuGUAGCUGUG-CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.