miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21423 5' -61 NC_004812.1 + 87887 0.66 0.75815
Target:  5'- gCUgCGgauGaAGGGCguGCUggcGGGCGAGGa -3'
miRNA:   3'- gGA-GCag-C-UCCCGguCGA---CCCGCUCC- -5'
21423 5' -61 NC_004812.1 + 5078 0.66 0.75815
Target:  5'- aCUCGgggggcCGGGGuCCGGCcgggGaGGCGGGGg -3'
miRNA:   3'- gGAGCa-----GCUCCcGGUCGa---C-CCGCUCC- -5'
21423 5' -61 NC_004812.1 + 78162 0.66 0.75815
Target:  5'- cCCUCGUCcAGGaCgGGCUGGaugaGCGGGa -3'
miRNA:   3'- -GGAGCAGcUCCcGgUCGACC----CGCUCc -5'
21423 5' -61 NC_004812.1 + 35979 0.66 0.75815
Target:  5'- aCUCGgggggCcGGGGuCCGGCcgggGaGGCGGGGg -3'
miRNA:   3'- gGAGCa----GcUCCC-GGUCGa---C-CCGCUCC- -5'
21423 5' -61 NC_004812.1 + 132259 0.66 0.75815
Target:  5'- uCUUCGcugggggCGAGGGUguGUgguggUGGGgGGGGg -3'
miRNA:   3'- -GGAGCa------GCUCCCGguCG-----ACCCgCUCC- -5'
21423 5' -61 NC_004812.1 + 17316 0.66 0.75815
Target:  5'- uCC-CGUUGgcGGGGgUGGUgguggGGGCGGGGg -3'
miRNA:   3'- -GGaGCAGC--UCCCgGUCGa----CCCGCUCC- -5'
21423 5' -61 NC_004812.1 + 107659 0.66 0.755418
Target:  5'- gCCcCGUCGAGGcucgccgcgucggcGCCaAGCUGGugGCGGGc -3'
miRNA:   3'- -GGaGCAGCUCC--------------CGG-UCGACC--CGCUCc -5'
21423 5' -61 NC_004812.1 + 55379 0.66 0.749006
Target:  5'- gCC-CGUCGAGGccggcgcggcGCCccuGCUGGcggccGCGGGGc -3'
miRNA:   3'- -GGaGCAGCUCC----------CGGu--CGACC-----CGCUCC- -5'
21423 5' -61 NC_004812.1 + 64810 0.66 0.749006
Target:  5'- gCCUgaCGgcCGAGGGCCugacGGCcaUGGGCGAc- -3'
miRNA:   3'- -GGA--GCa-GCUCCCGG----UCG--ACCCGCUcc -5'
21423 5' -61 NC_004812.1 + 77258 0.66 0.749006
Target:  5'- cCCUCG-CGGGGGCgCcGCUGGcGCu--- -3'
miRNA:   3'- -GGAGCaGCUCCCG-GuCGACC-CGcucc -5'
21423 5' -61 NC_004812.1 + 59769 0.66 0.749006
Target:  5'- cCCUUuUUGuGGGGCCGGUggGGGCGGc- -3'
miRNA:   3'- -GGAGcAGC-UCCCGGUCGa-CCCGCUcc -5'
21423 5' -61 NC_004812.1 + 146777 0.66 0.749006
Target:  5'- gCgUCGUCGAggcccaacgaGGGCC-GCgaGGGCGgcuGGGa -3'
miRNA:   3'- -GgAGCAGCU----------CCCGGuCGa-CCCGC---UCC- -5'
21423 5' -61 NC_004812.1 + 61369 0.66 0.749006
Target:  5'- --gCGUauauccgaGAGGGCggggCGGCgGGGUGAGGg -3'
miRNA:   3'- ggaGCAg-------CUCCCG----GUCGaCCCGCUCC- -5'
21423 5' -61 NC_004812.1 + 115190 0.66 0.749006
Target:  5'- aCgCGg-GGGGGCCGggaaagccGCgaGGGCGAGGg -3'
miRNA:   3'- gGaGCagCUCCCGGU--------CGa-CCCGCUCC- -5'
21423 5' -61 NC_004812.1 + 87574 0.66 0.749006
Target:  5'- cCCUCGaCGcccGCCAuGCUGGGCcuGGGGa -3'
miRNA:   3'- -GGAGCaGCuccCGGU-CGACCCG--CUCC- -5'
21423 5' -61 NC_004812.1 + 153955 0.66 0.747166
Target:  5'- gCCUCGUCGAuGcGCUccgugcagacGGCgcaggucucgcgGGGCGGGGc -3'
miRNA:   3'- -GGAGCAGCUcC-CGG----------UCGa-----------CCCGCUCC- -5'
21423 5' -61 NC_004812.1 + 81786 0.66 0.747166
Target:  5'- -aUCGUCGggagGGGGCCGGCggcgucggccccGGGCuccAGGa -3'
miRNA:   3'- ggAGCAGC----UCCCGGUCGa-----------CCCGc--UCC- -5'
21423 5' -61 NC_004812.1 + 123054 0.66 0.747166
Target:  5'- gCCUCGUCGAuGcGCUccgugcagacGGCgcaggucucgcgGGGCGGGGc -3'
miRNA:   3'- -GGAGCAGCUcC-CGG----------UCGa-----------CCCGCUCC- -5'
21423 5' -61 NC_004812.1 + 152486 0.66 0.739769
Target:  5'- cCCUCuccgaCGAGGGCCccgccGGCgccGGG-GAGGa -3'
miRNA:   3'- -GGAGca---GCUCCCGG-----UCGa--CCCgCUCC- -5'
21423 5' -61 NC_004812.1 + 98296 0.66 0.739769
Target:  5'- gCUCGUCGuccGGGGCUccGGC-GGcGCGcGGg -3'
miRNA:   3'- gGAGCAGC---UCCCGG--UCGaCC-CGCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.