miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21423 5' -61 NC_004812.1 + 86 0.69 0.556804
Target:  5'- aCUCG-CGAGGGaCgGGCcgGGGCGcgcgcGGGg -3'
miRNA:   3'- gGAGCaGCUCCC-GgUCGa-CCCGC-----UCC- -5'
21423 5' -61 NC_004812.1 + 711 0.67 0.702048
Target:  5'- uCCgucggCGUCGGcgccggcgcGGucGCCGGCggGGGUGGGGg -3'
miRNA:   3'- -GGa----GCAGCU---------CC--CGGUCGa-CCCGCUCC- -5'
21423 5' -61 NC_004812.1 + 1818 0.66 0.711578
Target:  5'- --aCGUCG-GGGCCGccccGUcGGGgGAGGg -3'
miRNA:   3'- ggaGCAGCuCCCGGU----CGaCCCgCUCC- -5'
21423 5' -61 NC_004812.1 + 2039 0.66 0.711577
Target:  5'- gCCUCGgucggcggCGGGGGgC-GC-GGGgGAGGg -3'
miRNA:   3'- -GGAGCa-------GCUCCCgGuCGaCCCgCUCC- -5'
21423 5' -61 NC_004812.1 + 3071 0.69 0.566382
Target:  5'- gCCUCGcCGGuGGGCggcgggacgaCGGCguggGGGgGAGGg -3'
miRNA:   3'- -GGAGCaGCU-CCCG----------GUCGa---CCCgCUCC- -5'
21423 5' -61 NC_004812.1 + 3077 0.71 0.42125
Target:  5'- gCCgcgcgCGUCGGuccaGGCgGGCgGGGCGGGGg -3'
miRNA:   3'- -GGa----GCAGCUc---CCGgUCGaCCCGCUCC- -5'
21423 5' -61 NC_004812.1 + 3499 0.7 0.491351
Target:  5'- gCCgCGggcgCGggcccGGGGCCGGCggccccggGGGCGGGGc -3'
miRNA:   3'- -GGaGCa---GC-----UCCCGGUCGa-------CCCGCUCC- -5'
21423 5' -61 NC_004812.1 + 3654 0.67 0.673168
Target:  5'- cCCgCGUCugcGucGGCCAGCaggGGGCGcAGGc -3'
miRNA:   3'- -GGaGCAG---CucCCGGUCGa--CCCGC-UCC- -5'
21423 5' -61 NC_004812.1 + 4794 0.69 0.576002
Target:  5'- --gCGgggCGAGGGCUGGUgcgGGcGCGGGGu -3'
miRNA:   3'- ggaGCa--GCUCCCGGUCGa--CC-CGCUCC- -5'
21423 5' -61 NC_004812.1 + 4829 0.67 0.681869
Target:  5'- gCCUCGUCGgcguccaGGGGCaCGGCccgcgGcGGCGcGGc -3'
miRNA:   3'- -GGAGCAGC-------UCCCG-GUCGa----C-CCGCuCC- -5'
21423 5' -61 NC_004812.1 + 4960 0.7 0.528374
Target:  5'- --cCGgCGGGcGGCCGGCgGcGGCGAGGc -3'
miRNA:   3'- ggaGCaGCUC-CCGGUCGaC-CCGCUCC- -5'
21423 5' -61 NC_004812.1 + 4996 0.67 0.692464
Target:  5'- gCCgugCGcCGcAGGGCgGGCggGGGCGgcAGGu -3'
miRNA:   3'- -GGa--GCaGC-UCCCGgUCGa-CCCGC--UCC- -5'
21423 5' -61 NC_004812.1 + 5078 0.66 0.75815
Target:  5'- aCUCGgggggcCGGGGuCCGGCcgggGaGGCGGGGg -3'
miRNA:   3'- gGAGCa-----GCUCCcGGUCGa---C-CCGCUCC- -5'
21423 5' -61 NC_004812.1 + 5455 0.74 0.312311
Target:  5'- uCCUCcaccauggaggccaGcAGGGCCAGCUGGcGCGGGGa -3'
miRNA:   3'- -GGAGcag-----------C-UCCCGGUCGACC-CGCUCC- -5'
21423 5' -61 NC_004812.1 + 5456 0.7 0.509722
Target:  5'- aCUCG-CGcccgcccaccAGGGCCacGGggGGGCGAGGg -3'
miRNA:   3'- gGAGCaGC----------UCCCGG--UCgaCCCGCUCC- -5'
21423 5' -61 NC_004812.1 + 5573 0.67 0.702048
Target:  5'- aCUCG-CGcccgcccaccAGGGCCacgGGggGGGCGGGGu -3'
miRNA:   3'- gGAGCaGC----------UCCCGG---UCgaCCCGCUCC- -5'
21423 5' -61 NC_004812.1 + 5622 0.66 0.721047
Target:  5'- gCCggaggCGgcUCGGGGGCCGggcccggggucGCcgGGcGCGAGGg -3'
miRNA:   3'- -GGa----GC--AGCUCCCGGU-----------CGa-CC-CGCUCC- -5'
21423 5' -61 NC_004812.1 + 5987 0.67 0.702048
Target:  5'- -gUCG-CGGGGugguaggcGCCGGg-GGGCGAGGg -3'
miRNA:   3'- ggAGCaGCUCC--------CGGUCgaCCCGCUCC- -5'
21423 5' -61 NC_004812.1 + 6029 0.66 0.727634
Target:  5'- gCCcCGUCGAGGaGCCcgccgccgcgcGGCUaucgacaccgcgcaGGcGCGGGGg -3'
miRNA:   3'- -GGaGCAGCUCC-CGG-----------UCGA--------------CC-CGCUCC- -5'
21423 5' -61 NC_004812.1 + 6160 0.7 0.519015
Target:  5'- ---gGUCGGGGGCCugGGC--GGCGGGGg -3'
miRNA:   3'- ggagCAGCUCCCGG--UCGacCCGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.