miRNA display CGI

Results 1 - 20 of 1183 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21424	3'	-63.5	NC_004812.1	+	123777	0.65	0.642442
	Target:  5'- cUGGgGGCcGCCCCcc-GCCCccacucgUCCGCg -3' miRNA:   3'- cGCCgCCGcUGGGGcuuCGGG-------AGGCG- -5'
21424	3'	-63.5	NC_004812.1	+	40870	0.65	0.64052
	Target:  5'- -aGGCGccgcuuucgccucuGUGACUCCGgcGCCUUgCCGUg -3' miRNA:   3'- cgCCGC--------------CGCUGGGGCuuCGGGA-GGCG- -5'
21424	3'	-63.5	NC_004812.1	+	99979	0.65	0.64052
	Target:  5'- cCGGCGGgGGCCaggcagcucgccagCCucagGGAGCUCgcgCCGCg -3' miRNA:   3'- cGCCGCCgCUGG--------------GG----CUUCGGGa--GGCG- -5'
21424	3'	-63.5	NC_004812.1	+	99274	0.65	0.64052
	Target:  5'- cCGGCGGCccgugggguccaGGCgCCGGcagaccugcgcgucGGCCgUCUGCa -3' miRNA:   3'- cGCCGCCG------------CUGgGGCU--------------UCGGgAGGCG- -5'
21424	3'	-63.5	NC_004812.1	+	141768	0.65	0.63956
	Target:  5'- cGCGG-GGCGGCgUCGAacGGCCgCgcgggggggcgggCCGCg -3' miRNA:   3'- -CGCCgCCGCUGgGGCU--UCGG-Ga------------GGCG- -5'
21424	3'	-63.5	NC_004812.1	+	120792	0.66	0.637638
	Target:  5'- cGCGaCGGCGacgcccagccccacgGCCCCGAGacGCaCUUCaCGCa -3' miRNA:   3'- -CGCcGCCGC---------------UGGGGCUU--CG-GGAG-GCG- -5'
21424	3'	-63.5	NC_004812.1	+	128052	0.66	0.633794
	Target:  5'- cCGGCcgaacaucGCGGCgCCCGAGGUCgggCCGCu -3' miRNA:   3'- cGCCGc-------CGCUG-GGGCUUCGGga-GGCG- -5'
21424	3'	-63.5	NC_004812.1	+	154104	0.66	0.633794
	Target:  5'- aCGGCcGCG-CCgCCGAcucGCCCgcCCGCg -3' miRNA:   3'- cGCCGcCGCuGG-GGCUu--CGGGa-GGCG- -5'
21424	3'	-63.5	NC_004812.1	+	15748	0.66	0.633794
	Target:  5'- cGCGGgGGCcGCCCgCGccgucagccGGGCCCUggGCg -3' miRNA:   3'- -CGCCgCCGcUGGG-GC---------UUCGGGAggCG- -5'
21424	3'	-63.5	NC_004812.1	+	135867	0.66	0.633794
	Target:  5'- -gGGCaacuucaGCGcCCCCGAcGUCCUCgCGCu -3' miRNA:   3'- cgCCGc------CGCuGGGGCUuCGGGAG-GCG- -5'
21424	3'	-63.5	NC_004812.1	+	153147	0.66	0.633794
	Target:  5'- aCGGC-GCGACcgCCCGccGGGCCCgacccCCGCn -3' miRNA:   3'- cGCCGcCGCUG--GGGC--UUCGGGa----GGCG- -5'
21424	3'	-63.5	NC_004812.1	+	48093	0.66	0.633794
	Target:  5'- uCGGCGGCcGCCgCCGu-GCgCC-CCGUg -3' miRNA:   3'- cGCCGCCGcUGG-GGCuuCG-GGaGGCG- -5'
21424	3'	-63.5	NC_004812.1	+	112892	0.66	0.633794
	Target:  5'- gGCGGCGaGaCGACggcgaCgGAGcGCCCUcgCCGCg -3' miRNA:   3'- -CGCCGC-C-GCUGg----GgCUU-CGGGA--GGCG- -5'
21424	3'	-63.5	NC_004812.1	+	110610	0.66	0.633794
	Target:  5'- cGCGcGCGaauuCG-CCCgGGAGaugaCCUCCGCg -3' miRNA:   3'- -CGC-CGCc---GCuGGGgCUUCg---GGAGGCG- -5'
21424	3'	-63.5	NC_004812.1	+	28596	0.66	0.633794
	Target:  5'- aCGGCcGCG-CCgCCGAcucGCCCgcCCGCg -3' miRNA:   3'- cGCCGcCGCuGG-GGCUu--CGGGa-GGCG- -5'
21424	3'	-63.5	NC_004812.1	+	61072	0.66	0.633794
	Target:  5'- cCGG-GGCGcgacGCCCCGGGccGCCCcgCCGg -3' miRNA:   3'- cGCCgCCGC----UGGGGCUU--CGGGa-GGCg -5'
21424	3'	-63.5	NC_004812.1	+	113071	0.66	0.633794
	Target:  5'- cGCGGCGGCagcgaGCCgCGAca-CCgCCGCg -3' miRNA:   3'- -CGCCGCCGc----UGGgGCUucgGGaGGCG- -5'
21424	3'	-63.5	NC_004812.1	+	11262	0.66	0.633794
	Target:  5'- aCGGCcagccccacGGCcGCCCCGAGcacGCCCacgaggcgcgCCGCg -3' miRNA:   3'- cGCCG---------CCGcUGGGGCUU---CGGGa---------GGCG- -5'
21424	3'	-63.5	NC_004812.1	+	48325	0.66	0.633794
	Target:  5'- cGUGGUGccCGACCCCGcccgCCUCCGUu -3' miRNA:   3'- -CGCCGCc-GCUGGGGCuucgGGAGGCG- -5'
21424	3'	-63.5	NC_004812.1	+	48827	0.66	0.633794
	Target:  5'- -gGGCGGcCGGCCCCaguaCCgCUaCCGCg -3' miRNA:   3'- cgCCGCC-GCUGGGGcuucGG-GA-GGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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