miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21424 5' -54.1 NC_004812.1 + 66571 0.65 0.968743
Target:  5'- gGCGgagGGAcgagcggcuGCGCGUCGaucgccggcccgcGGGCCGC-UCCa -3'
miRNA:   3'- -UGCa--CCU---------CGCGUAGU-------------UCUGGUGcAGG- -5'
21424 5' -54.1 NC_004812.1 + 14108 0.66 0.967202
Target:  5'- cGCGgGGAGCGCGcCGugcgugaacgccgccAG-CCGCGUCa -3'
miRNA:   3'- -UGCaCCUCGCGUaGU---------------UCuGGUGCAGg -5'
21424 5' -54.1 NC_004812.1 + 101951 0.66 0.965931
Target:  5'- cGCGggcGGcGgGCGUCAgGGGCCGCGgacgCCc -3'
miRNA:   3'- -UGCa--CCuCgCGUAGU-UCUGGUGCa---GG- -5'
21424 5' -54.1 NC_004812.1 + 90499 0.66 0.965931
Target:  5'- gGCGgGaGGGCGCGggGAGGggGCGUCCg -3'
miRNA:   3'- -UGCaC-CUCGCGUagUUCUggUGCAGG- -5'
21424 5' -54.1 NC_004812.1 + 89767 0.66 0.965931
Target:  5'- uCGgGGGGCGgGUCugcACCGCGcUCCg -3'
miRNA:   3'- uGCaCCUCGCgUAGuucUGGUGC-AGG- -5'
21424 5' -54.1 NC_004812.1 + 118594 0.66 0.965931
Target:  5'- cCGUccGGGGgGCGUUcgAGGACCGCGgcuaCCc -3'
miRNA:   3'- uGCA--CCUCgCGUAG--UUCUGGUGCa---GG- -5'
21424 5' -54.1 NC_004812.1 + 35928 0.66 0.965931
Target:  5'- -aGUGGGGCgGCAggCGGGGCaGCG-CCg -3'
miRNA:   3'- ugCACCUCG-CGUa-GUUCUGgUGCaGG- -5'
21424 5' -54.1 NC_004812.1 + 127938 0.66 0.965931
Target:  5'- cACGcGaAGCGCGUCcccGGCCGCcaGUCCg -3'
miRNA:   3'- -UGCaCcUCGCGUAGuu-CUGGUG--CAGG- -5'
21424 5' -54.1 NC_004812.1 + 60775 0.66 0.965931
Target:  5'- cCGguugGGGGCGCuGUCGuAGACCAguUCCc -3'
miRNA:   3'- uGCa---CCUCGCG-UAGU-UCUGGUgcAGG- -5'
21424 5' -54.1 NC_004812.1 + 62748 0.66 0.965931
Target:  5'- cCGgGGAuCGCAcCGGGGuCCugGUCCg -3'
miRNA:   3'- uGCaCCUcGCGUaGUUCU-GGugCAGG- -5'
21424 5' -54.1 NC_004812.1 + 91603 0.66 0.965931
Target:  5'- gACGUGcGguugaugaaGGCGCAguuguUCuugcGGACCAgGUCCa -3'
miRNA:   3'- -UGCAC-C---------UCGCGU-----AGu---UCUGGUgCAGG- -5'
21424 5' -54.1 NC_004812.1 + 124250 0.66 0.965931
Target:  5'- gGCGgGGGGCGCG-CGcGGCgGCGcCCc -3'
miRNA:   3'- -UGCaCCUCGCGUaGUuCUGgUGCaGG- -5'
21424 5' -54.1 NC_004812.1 + 52087 0.66 0.965931
Target:  5'- gGCGUucGcGGGCGCG-CGAcGACCGCccGUCCc -3'
miRNA:   3'- -UGCA--C-CUCGCGUaGUU-CUGGUG--CAGG- -5'
21424 5' -54.1 NC_004812.1 + 79966 0.66 0.962603
Target:  5'- cCGUaGAGCcgagagaagacGCAgCGcAGGCCGCGUCCg -3'
miRNA:   3'- uGCAcCUCG-----------CGUaGU-UCUGGUGCAGG- -5'
21424 5' -54.1 NC_004812.1 + 81113 0.66 0.962603
Target:  5'- gGCGcUGGGGgGCGUgCcgcuGGACCugG-CCg -3'
miRNA:   3'- -UGC-ACCUCgCGUA-Gu---UCUGGugCaGG- -5'
21424 5' -54.1 NC_004812.1 + 100384 0.66 0.962603
Target:  5'- -aGUcGGcGCGCcgCGAGGCCgACGcCCu -3'
miRNA:   3'- ugCA-CCuCGCGuaGUUCUGG-UGCaGG- -5'
21424 5' -54.1 NC_004812.1 + 37277 0.66 0.962603
Target:  5'- ---cGGGGUGCAgcggguGGGCCGUGUCCg -3'
miRNA:   3'- ugcaCCUCGCGUagu---UCUGGUGCAGG- -5'
21424 5' -54.1 NC_004812.1 + 29352 0.66 0.962603
Target:  5'- uGCGagGGGGCGCGggcucGGGCCGCGg-- -3'
miRNA:   3'- -UGCa-CCUCGCGUagu--UCUGGUGCagg -5'
21424 5' -54.1 NC_004812.1 + 154860 0.66 0.962603
Target:  5'- uGCGagGGGGCGCGggcucGGGCCGCGg-- -3'
miRNA:   3'- -UGCa-CCUCGCGUagu--UCUGGUGCagg -5'
21424 5' -54.1 NC_004812.1 + 112843 0.66 0.962603
Target:  5'- gGCGUGGccucGGCGC-UCAcgcgcuGGGCuCACG-CCa -3'
miRNA:   3'- -UGCACC----UCGCGuAGU------UCUG-GUGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.