miRNA display CGI


Results 1 - 20 of 929 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21426 3' -69 NC_004812.1 + 77354 0.66 0.406028
Target:  5'- uGGUCUC-CCCGcUgCCGCGGCCAa- -3'
miRNA:   3'- gCCGGGGcGGGCaGgGGCGCCGGUgc -5'
21426 3' -69 NC_004812.1 + 55641 0.66 0.406028
Target:  5'- cCGGCgCUCGCggaCGUCCgCgGCGGCgCGCc -3'
miRNA:   3'- -GCCG-GGGCGg--GCAGG-GgCGCCG-GUGc -5'
21426 3' -69 NC_004812.1 + 138245 0.66 0.406028
Target:  5'- gGGCCCgcggGCCCGgcgCCgCCGgUGGCCGa- -3'
miRNA:   3'- gCCGGGg---CGGGCa--GG-GGC-GCCGGUgc -5'
21426 3' -69 NC_004812.1 + 27927 0.66 0.406028
Target:  5'- gGcGCCCCGCcucCCGgagaCCGcCGGCCACc -3'
miRNA:   3'- gC-CGGGGCG---GGCagg-GGC-GCCGGUGc -5'
21426 3' -69 NC_004812.1 + 37570 0.66 0.406028
Target:  5'- uGGCagCCCGCCaCGUagacgggCCgGUGGCCGCc -3'
miRNA:   3'- gCCG--GGGCGG-GCAg------GGgCGCCGGUGc -5'
21426 3' -69 NC_004812.1 + 23425 0.66 0.406028
Target:  5'- -cGCCCCuggcguCCUGgugugCCUgGCGGCCGCGu -3'
miRNA:   3'- gcCGGGGc-----GGGCa----GGGgCGCCGGUGC- -5'
21426 3' -69 NC_004812.1 + 106158 0.66 0.406028
Target:  5'- aGGCCgaGCUCGgCCUCgGCGGCCucGCGc -3'
miRNA:   3'- gCCGGggCGGGCaGGGG-CGCCGG--UGC- -5'
21426 3' -69 NC_004812.1 + 74456 0.66 0.406028
Target:  5'- gCGcGCCCCGgaaCUCGUCCaCCGC--CCACGg -3'
miRNA:   3'- -GC-CGGGGC---GGGCAGG-GGCGccGGUGC- -5'
21426 3' -69 NC_004812.1 + 12545 0.66 0.406028
Target:  5'- -aGCUCCGCCaggCCCC-CGGCgGCGu -3'
miRNA:   3'- gcCGGGGCGGgcaGGGGcGCCGgUGC- -5'
21426 3' -69 NC_004812.1 + 145027 0.66 0.406028
Target:  5'- gCGGCgucccuCCCcCCCGgugCCCCaGCGacGCCGCGa -3'
miRNA:   3'- -GCCG------GGGcGGGCa--GGGG-CGC--CGGUGC- -5'
21426 3' -69 NC_004812.1 + 47461 0.66 0.406028
Target:  5'- aGGCCCgacgGCCgGUCCgUCGCcGCCGCc -3'
miRNA:   3'- gCCGGGg---CGGgCAGG-GGCGcCGGUGc -5'
21426 3' -69 NC_004812.1 + 80234 0.66 0.406028
Target:  5'- uGGCCCCGgugaCCaCGaUCCCGCGGUCc-- -3'
miRNA:   3'- gCCGGGGC----GG-GCaGGGGCGCCGGugc -5'
21426 3' -69 NC_004812.1 + 32359 0.66 0.406028
Target:  5'- gGGCgCCGCCgCGcgcgccCCCCGCcaGGCC-CGc -3'
miRNA:   3'- gCCGgGGCGG-GCa-----GGGGCG--CCGGuGC- -5'
21426 3' -69 NC_004812.1 + 101059 0.66 0.406028
Target:  5'- gGGCCCCggugGCCaCGUacgugaggcgcgCCgCGUGGCgCACGg -3'
miRNA:   3'- gCCGGGG----CGG-GCA------------GGgGCGCCG-GUGC- -5'
21426 3' -69 NC_004812.1 + 106508 0.66 0.406028
Target:  5'- gGGUCCgCGgCgCGgggCgCCgGCGGCCGCGg -3'
miRNA:   3'- gCCGGG-GCgG-GCa--G-GGgCGCCGGUGC- -5'
21426 3' -69 NC_004812.1 + 59908 0.66 0.406028
Target:  5'- nGGCaCCgcgUGCCCGUCgcggUCCaccuggggauugGCGGCCACGu -3'
miRNA:   3'- gCCG-GG---GCGGGCAG----GGG------------CGCCGGUGC- -5'
21426 3' -69 NC_004812.1 + 133694 0.66 0.406028
Target:  5'- gCGaCCCCacGCuCCGcCCCCGCaGGCaCGCGc -3'
miRNA:   3'- -GCcGGGG--CG-GGCaGGGGCG-CCG-GUGC- -5'
21426 3' -69 NC_004812.1 + 122184 0.66 0.406028
Target:  5'- --aCCCCGCgCGacgCCCCGgcgacgGGCCACGa -3'
miRNA:   3'- gccGGGGCGgGCa--GGGGCg-----CCGGUGC- -5'
21426 3' -69 NC_004812.1 + 36404 0.66 0.406028
Target:  5'- gGGCCCaGCCgGUUgCCCGCGaCgACGg -3'
miRNA:   3'- gCCGGGgCGGgCAG-GGGCGCcGgUGC- -5'
21426 3' -69 NC_004812.1 + 151858 0.66 0.406028
Target:  5'- uGGCCCgGCgccgagccgCCGcCCCCGgGG-CGCGu -3'
miRNA:   3'- gCCGGGgCG---------GGCaGGGGCgCCgGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.