miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21426 5' -50 NC_004812.1 + 152138 0.66 0.998605
Target:  5'- aUCCAGAggccgugGGCGGggucgcCGGgguacucgGGCGGGGa -3'
miRNA:   3'- -AGGUCUa------CUGCUauu---GCUa-------CCGCUCC- -5'
21426 5' -50 NC_004812.1 + 16170 0.66 0.998605
Target:  5'- gUCgCGGcgGugGAguUGGCGGUGGUGGa- -3'
miRNA:   3'- -AG-GUCuaCugCU--AUUGCUACCGCUcc -5'
21426 5' -50 NC_004812.1 + 133962 0.66 0.998605
Target:  5'- cCCGGGcacGCGggAGCccccgGGUGGCGGGGg -3'
miRNA:   3'- aGGUCUac-UGCuaUUG-----CUACCGCUCC- -5'
21426 5' -50 NC_004812.1 + 121237 0.66 0.998605
Target:  5'- aUCCAGAggccgugGGCGGggucgcCGGgguacucgGGCGGGGa -3'
miRNA:   3'- -AGGUCUa------CUGCUauu---GCUa-------CCGCUCC- -5'
21426 5' -50 NC_004812.1 + 55904 0.66 0.998605
Target:  5'- -gCGGAUGAgGGccuCGAucugguccucUGGCGAGGu -3'
miRNA:   3'- agGUCUACUgCUauuGCU----------ACCGCUCC- -5'
21426 5' -50 NC_004812.1 + 107491 0.66 0.998578
Target:  5'- aCCAcgagcgcGGUGAUGGUauuGACGGUGGCccgcAGGa -3'
miRNA:   3'- aGGU-------CUACUGCUA---UUGCUACCGc---UCC- -5'
21426 5' -50 NC_004812.1 + 112889 0.66 0.998321
Target:  5'- -aCGGgcGGCGA-GACGAcGGCGAcGGa -3'
miRNA:   3'- agGUCuaCUGCUaUUGCUaCCGCU-CC- -5'
21426 5' -50 NC_004812.1 + 45427 0.66 0.998321
Target:  5'- aCCAGcccguaGGCGGUcACGAggcagagggUGGUGAGGu -3'
miRNA:   3'- aGGUCua----CUGCUAuUGCU---------ACCGCUCC- -5'
21426 5' -50 NC_004812.1 + 147995 0.66 0.998321
Target:  5'- gCCGGgcGGCGGggcCGAgGGCGAcGGa -3'
miRNA:   3'- aGGUCuaCUGCUauuGCUaCCGCU-CC- -5'
21426 5' -50 NC_004812.1 + 86403 0.66 0.998321
Target:  5'- gCgGGGUGACGGUGACGAc--CGAcGGa -3'
miRNA:   3'- aGgUCUACUGCUAUUGCUaccGCU-CC- -5'
21426 5' -50 NC_004812.1 + 122235 0.66 0.998321
Target:  5'- -gCGGGgggcucGGCGGcggGGCGcgGGCGGGGg -3'
miRNA:   3'- agGUCUa-----CUGCUa--UUGCuaCCGCUCC- -5'
21426 5' -50 NC_004812.1 + 153136 0.66 0.998321
Target:  5'- -gCGGGgggcucGGCGGcggGGCGcgGGCGGGGg -3'
miRNA:   3'- agGUCUa-----CUGCUa--UUGCuaCCGCUCC- -5'
21426 5' -50 NC_004812.1 + 123829 0.66 0.998321
Target:  5'- cCCAGAcccgGGCGcacGCGAcgGGCGAGu -3'
miRNA:   3'- aGGUCUa---CUGCuauUGCUa-CCGCUCc -5'
21426 5' -50 NC_004812.1 + 148176 0.66 0.99829
Target:  5'- cUCCGGcgGGCGggGGCGgcGGCcuccgguacggccGGGGc -3'
miRNA:   3'- -AGGUCuaCUGCuaUUGCuaCCG-------------CUCC- -5'
21426 5' -50 NC_004812.1 + 117275 0.66 0.99829
Target:  5'- cUCCGGcgGGCGggGGCGgcGGCcuccgguacggccGGGGc -3'
miRNA:   3'- -AGGUCuaCUGCuaUUGCuaCCG-------------CUCC- -5'
21426 5' -50 NC_004812.1 + 96825 0.66 0.998227
Target:  5'- gCCAaGAUGcuguucuaccucgaGCGGU-GCGAcGGCGGGGu -3'
miRNA:   3'- aGGU-CUAC--------------UGCUAuUGCUaCCGCUCC- -5'
21426 5' -50 NC_004812.1 + 33931 0.66 0.99799
Target:  5'- aCCGGAcagcGACGAggacagcGACGA-GGaCGAGGa -3'
miRNA:   3'- aGGUCUa---CUGCUa------UUGCUaCC-GCUCC- -5'
21426 5' -50 NC_004812.1 + 74354 0.66 0.99799
Target:  5'- -gCAGG-GGCGcgGGCGcgGGCGGcGGg -3'
miRNA:   3'- agGUCUaCUGCuaUUGCuaCCGCU-CC- -5'
21426 5' -50 NC_004812.1 + 154936 0.66 0.99799
Target:  5'- uUUCGGGaGGCGGacGCGggGGgGGGGg -3'
miRNA:   3'- -AGGUCUaCUGCUauUGCuaCCgCUCC- -5'
21426 5' -50 NC_004812.1 + 29428 0.66 0.99799
Target:  5'- uUUCGGGaGGCGGacGCGggGGgGGGGg -3'
miRNA:   3'- -AGGUCUaCUGCUauUGCuaCCgCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.