miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21426 5' -50 NC_004812.1 + 19631 0.66 0.99799
Target:  5'- gUCCGGucucgcGGCGAcGugGGccgccagGGCGAGGg -3'
miRNA:   3'- -AGGUCua----CUGCUaUugCUa------CCGCUCC- -5'
21426 5' -50 NC_004812.1 + 64554 0.66 0.99799
Target:  5'- cCCGGGUcGGCGcacaggAACGGUGuuGAGGg -3'
miRNA:   3'- aGGUCUA-CUGCua----UUGCUACcgCUCC- -5'
21426 5' -50 NC_004812.1 + 44849 0.66 0.99799
Target:  5'- gUCCcGAUGGCGGgc-CGGUGGUacAGGa -3'
miRNA:   3'- -AGGuCUACUGCUauuGCUACCGc-UCC- -5'
21426 5' -50 NC_004812.1 + 46297 0.66 0.99799
Target:  5'- gCCGGA-GACGAcguACGG-GGCGGGc -3'
miRNA:   3'- aGGUCUaCUGCUau-UGCUaCCGCUCc -5'
21426 5' -50 NC_004812.1 + 154936 0.66 0.99799
Target:  5'- uUUCGGGaGGCGGacGCGggGGgGGGGg -3'
miRNA:   3'- -AGGUCUaCUGCUauUGCuaCCgCUCC- -5'
21426 5' -50 NC_004812.1 + 18809 0.66 0.99799
Target:  5'- gUCCAGGcggGGCGGguguGCGGcgGGCGGcGGu -3'
miRNA:   3'- -AGGUCUa--CUGCUau--UGCUa-CCGCU-CC- -5'
21426 5' -50 NC_004812.1 + 14446 0.66 0.99799
Target:  5'- gCCAacGAUGGCGcccGUGuggccggagggcGCGggGGCGGGGc -3'
miRNA:   3'- aGGU--CUACUGC---UAU------------UGCuaCCGCUCC- -5'
21426 5' -50 NC_004812.1 + 124907 0.66 0.997605
Target:  5'- cCCGGccgGGCGGcGGCGggGGCGGcGGc -3'
miRNA:   3'- aGGUCua-CUGCUaUUGCuaCCGCU-CC- -5'
21426 5' -50 NC_004812.1 + 6065 0.66 0.997605
Target:  5'- --aAGgcGGCGGaGGCGAaggggGGCGAGGg -3'
miRNA:   3'- aggUCuaCUGCUaUUGCUa----CCGCUCC- -5'
21426 5' -50 NC_004812.1 + 55680 0.66 0.997605
Target:  5'- gUCCAG-UGGCugu--CGGUGGCGGuGGg -3'
miRNA:   3'- -AGGUCuACUGcuauuGCUACCGCU-CC- -5'
21426 5' -50 NC_004812.1 + 56582 0.66 0.997605
Target:  5'- cUCgAGcgcGGCGAUGGCGccGcGCGGGGg -3'
miRNA:   3'- -AGgUCua-CUGCUAUUGCuaC-CGCUCC- -5'
21426 5' -50 NC_004812.1 + 61663 0.66 0.997605
Target:  5'- cCCGGG-GACGAagAGCGA-GGCGAu- -3'
miRNA:   3'- aGGUCUaCUGCUa-UUGCUaCCGCUcc -5'
21426 5' -50 NC_004812.1 + 59523 0.66 0.997605
Target:  5'- -aCAGggGGCGGUAGcCGA-GGCGcucGGGa -3'
miRNA:   3'- agGUCuaCUGCUAUU-GCUaCCGC---UCC- -5'
21426 5' -50 NC_004812.1 + 155808 0.66 0.997605
Target:  5'- cCCGGccgGGCGGcGGCGggGGCGGcGGc -3'
miRNA:   3'- aGGUCua-CUGCUaUUGCuaCCGCU-CC- -5'
21426 5' -50 NC_004812.1 + 104161 0.66 0.997605
Target:  5'- -gCAGGaGGCGA---CGcgGGCGGGGg -3'
miRNA:   3'- agGUCUaCUGCUauuGCuaCCGCUCC- -5'
21426 5' -50 NC_004812.1 + 10472 0.66 0.997605
Target:  5'- gCCGGGUGGgGAccGCGggGGgGAGu -3'
miRNA:   3'- aGGUCUACUgCUauUGCuaCCgCUCc -5'
21426 5' -50 NC_004812.1 + 88929 0.66 0.997605
Target:  5'- cUCGGAacccUGGCcgc--CGGUGGCGAGGa -3'
miRNA:   3'- aGGUCU----ACUGcuauuGCUACCGCUCC- -5'
21426 5' -50 NC_004812.1 + 36966 0.66 0.997605
Target:  5'- --aAGgcGGCGGaGGCGAaggggGGCGAGGg -3'
miRNA:   3'- aggUCuaCUGCUaUUGCUa----CCGCUCC- -5'
21426 5' -50 NC_004812.1 + 146157 0.66 0.997605
Target:  5'- uUCgAGAgcggcGACGGguGCGAguaGGUGAGGa -3'
miRNA:   3'- -AGgUCUa----CUGCUauUGCUa--CCGCUCC- -5'
21426 5' -50 NC_004812.1 + 70256 0.66 0.997605
Target:  5'- gCCggGGGUGGCgGAUcGCGGUGG-GGGGc -3'
miRNA:   3'- aGG--UCUACUG-CUAuUGCUACCgCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.