miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21427 3' -57 NC_004812.1 + 58541 0.67 0.85244
Target:  5'- aGCC-CGgGgccCGGCUCCGGCcGCCCc -3'
miRNA:   3'- -UGGaGUgCau-GCUGAGGCUGaCGGGc -5'
21427 3' -57 NC_004812.1 + 131893 0.67 0.85244
Target:  5'- cGCCUgGCGUuCGACga-GACgcucGCCCGg -3'
miRNA:   3'- -UGGAgUGCAuGCUGaggCUGa---CGGGC- -5'
21427 3' -57 NC_004812.1 + 106409 0.67 0.85244
Target:  5'- gGCCUCACGgcccCGGCguuccucugcgCCGGCcacggGCCCa -3'
miRNA:   3'- -UGGAGUGCau--GCUGa----------GGCUGa----CGGGc -5'
21427 3' -57 NC_004812.1 + 47205 0.67 0.85244
Target:  5'- gACCUgGgGgcGCGGCgccCCGACUGCCUu -3'
miRNA:   3'- -UGGAgUgCa-UGCUGa--GGCUGACGGGc -5'
21427 3' -57 NC_004812.1 + 143996 0.67 0.85244
Target:  5'- -gCUCGCGgcgGCGuCUUCGugUGUCCc -3'
miRNA:   3'- ugGAGUGCa--UGCuGAGGCugACGGGc -5'
21427 3' -57 NC_004812.1 + 48720 0.67 0.85244
Target:  5'- cACCgCGCGUGCGGCccggaggaCGACcGCCCc -3'
miRNA:   3'- -UGGaGUGCAUGCUGag------GCUGaCGGGc -5'
21427 3' -57 NC_004812.1 + 118089 0.67 0.85244
Target:  5'- gACCacCGCGU---GCUCCGGCUGUCCc -3'
miRNA:   3'- -UGGa-GUGCAugcUGAGGCUGACGGGc -5'
21427 3' -57 NC_004812.1 + 15301 0.67 0.85244
Target:  5'- cGCCUCACGUcggGgGGgUCCGucuuCUGCuCCa -3'
miRNA:   3'- -UGGAGUGCA---UgCUgAGGCu---GACG-GGc -5'
21427 3' -57 NC_004812.1 + 74262 0.67 0.850117
Target:  5'- cGCCUCGCcccggccgcgcaccGUccGCGGgUCCGGCUcauggcgcucGCCCGg -3'
miRNA:   3'- -UGGAGUG--------------CA--UGCUgAGGCUGA----------CGGGC- -5'
21427 3' -57 NC_004812.1 + 108898 0.67 0.836632
Target:  5'- cGCCUCGCGc-CGGC-CgGGC-GCCCGg -3'
miRNA:   3'- -UGGAGUGCauGCUGaGgCUGaCGGGC- -5'
21427 3' -57 NC_004812.1 + 28584 0.67 0.836632
Target:  5'- uGCC-CGCGcucgACGGCcgcgccgCCGACUcGCCCGc -3'
miRNA:   3'- -UGGaGUGCa---UGCUGa------GGCUGA-CGGGC- -5'
21427 3' -57 NC_004812.1 + 10761 0.67 0.836632
Target:  5'- cGCCUgCGCGa--GACUCCGuCcccggGCCCGg -3'
miRNA:   3'- -UGGA-GUGCaugCUGAGGCuGa----CGGGC- -5'
21427 3' -57 NC_004812.1 + 89310 0.67 0.836632
Target:  5'- cGCUUCGCGcaguucUGCGGCgCCGGg-GCCCGg -3'
miRNA:   3'- -UGGAGUGC------AUGCUGaGGCUgaCGGGC- -5'
21427 3' -57 NC_004812.1 + 154092 0.67 0.836632
Target:  5'- uGCC-CGCGcucgACGGCcgcgccgCCGACUcGCCCGc -3'
miRNA:   3'- -UGGaGUGCa---UGCUGa------GGCUGA-CGGGC- -5'
21427 3' -57 NC_004812.1 + 54525 0.67 0.835822
Target:  5'- gGCCUCgacggacGCGUugGuGC-CCGGCgcGCCCGg -3'
miRNA:   3'- -UGGAG-------UGCAugC-UGaGGCUGa-CGGGC- -5'
21427 3' -57 NC_004812.1 + 108156 0.67 0.828456
Target:  5'- uACCUgCcCG-ACGAC-CCGACgggGCCCGc -3'
miRNA:   3'- -UGGA-GuGCaUGCUGaGGCUGa--CGGGC- -5'
21427 3' -57 NC_004812.1 + 20245 0.67 0.828456
Target:  5'- gGCCUcCGCGgGCaGCUCCGAgaGCgCCGc -3'
miRNA:   3'- -UGGA-GUGCaUGcUGAGGCUgaCG-GGC- -5'
21427 3' -57 NC_004812.1 + 125235 0.68 0.811593
Target:  5'- aGCaggCGCGUGCGcACgcaggcgcgCCGGCgGCCCGg -3'
miRNA:   3'- -UGga-GUGCAUGC-UGa--------GGCUGaCGGGC- -5'
21427 3' -57 NC_004812.1 + 40809 0.68 0.811593
Target:  5'- cGCCUCACa-ACGGCUgCCGcucGCUGCCg- -3'
miRNA:   3'- -UGGAGUGcaUGCUGA-GGC---UGACGGgc -5'
21427 3' -57 NC_004812.1 + 77258 0.68 0.811593
Target:  5'- cCCUCGCGgggGCGcCgCUGgcGCUGCCCGc -3'
miRNA:   3'- uGGAGUGCa--UGCuGaGGC--UGACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.